Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:10890778-11370784

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10627 19 10895116 to 10895839 723 CpG island CpG island 10627
Tssr155143 19 10895225 to 10895272 47 + TSS region transcription start site region 155143
Prpf19 19 10895231 to 10909559 14328 + protein coding gene pre-mRNA processing factor 19
Tssr155144 19 10895274 to 10895313 39 + TSS region transcription start site region 155144
Tssr155145 19 10895372 to 10895383 11 + TSS region transcription start site region 155145
Tssr155146 19 10895391 to 10895402 11 + TSS region transcription start site region 155146
Tssr155147 19 10895420 to 10895425 5 + TSS region transcription start site region 155147
Zp1 19 10914296 to 10920601 6305 - protein coding gene zona pellucida glycoprotein 1
Tssr158257 19 10920629 to 10920635 6 - TSS region transcription start site region 158257
Tssr155148 19 10937154 to 10937178 24 + TSS region transcription start site region 155148
Ptgdr2 19 10937160 to 10942511 5351 + protein coding gene prostaglandin D2 receptor 2
Tssr155149 19 10937751 to 10937759 8 + TSS region transcription start site region 155149
Cpgi10628 19 10940101 to 10941339 1238 CpG island CpG island 10628
Ccdc86 19 10941481 to 10949266 7785 - protein coding gene coiled-coil domain containing 86
Tssr155150 19 10945262 to 10945268 6 + TSS region transcription start site region 155150
Tssr158258 19 10948297 to 10948342 45 - TSS region transcription start site region 158258
Tssr155151 19 10948407 to 10948427 20 + TSS region transcription start site region 155151
Cpgi10629 19 10948447 to 10949468 1021 CpG island CpG island 10629
Tssr158259 19 10948502 to 10948544 42 - TSS region transcription start site region 158259
Tssr158260 19 10948550 to 10948567 17 - TSS region transcription start site region 158260
Tssr158261 19 10948568 to 10948574 6 - TSS region transcription start site region 158261
Tssr158262 19 10949238 to 10949277 39 - TSS region transcription start site region 158262
Tssr5445 19 10952348 to 10952391 43 + TSS region transcription start site region 5445
Ms4a10 19 10962293 to 10974670 12377 - protein coding gene membrane-spanning 4-domains, subfamily A, member 10
Ms4ac 19 10962293 to 11640851 678558 complex/cluster/region membrane-spanning 4-domains, subfamily A cluster
Tssr158263 19 10968721 to 10968738 17 - TSS region transcription start site region 158263
Tssr158264 19 10968760 to 10968772 12 - TSS region transcription start site region 158264
Tssr158265 19 10974649 to 10974662 13 - TSS region transcription start site region 158265
Tssr158266 19 10974664 to 10974710 46 - TSS region transcription start site region 158266
Ms4a15 19 10978307 to 10993250 14943 - protein coding gene membrane-spanning 4-domains, subfamily A, member 15
Tssr158267 19 10993176 to 10993186 10 - TSS region transcription start site region 158267
Ms4a18 19 10997024 to 11018026 21002 - protein coding gene membrane-spanning 4-domains, subfamily A, member 18
Tssr158268 19 11017919 to 11017926 7 - TSS region transcription start site region 158268
Tssr158269 19 11017933 to 11017980 47 - TSS region transcription start site region 158269
Tssr158270 19 11018026 to 11018040 14 - TSS region transcription start site region 158270
Tssr158271 19 11018051 to 11018060 9 - TSS region transcription start site region 158271
Gm28347 19 11035415 to 11035832 417 - lincRNA gene predicted gene 28347
Tssr158272 19 11037661 to 11037667 6 - TSS region transcription start site region 158272
Cpgi10630 19 11044899 to 11045577 678 CpG island CpG island 10630
Tssr155152 19 11047612 to 11047619 7 + TSS region transcription start site region 155152
AW112010 19 11047617 to 11050566 2949 - lincRNA gene expressed sequence AW112010
Tssr158273 19 11047902 to 11047915 13 - TSS region transcription start site region 158273
Tssr158274 19 11047942 to 11047980 38 - TSS region transcription start site region 158274
Tssr155153 19 11047966 to 11047992 26 + TSS region transcription start site region 155153
Tssr158275 19 11048031 to 11048042 11 - TSS region transcription start site region 158275
Tssr158276 19 11048303 to 11048379 76 - TSS region transcription start site region 158276
Tssr158277 19 11049411 to 11049423 12 - TSS region transcription start site region 158277
Tssr158278 19 11049448 to 11049464 16 - TSS region transcription start site region 158278
Tssr158279 19 11049929 to 11049932 3 - TSS region transcription start site region 158279
Tssr158280 19 11050413 to 11050433 20 - TSS region transcription start site region 158280
Tssr158281 19 11050436 to 11050441 5 - TSS region transcription start site region 158281
Tssr158282 19 11050500 to 11050531 31 - TSS region transcription start site region 158282
Tssr158283 19 11052014 to 11052016 2 - TSS region transcription start site region 158283
Tssr158284 19 11055633 to 11055669 36 - TSS region transcription start site region 158284
Tssr158285 19 11055771 to 11055786 15 - TSS region transcription start site region 158285
Tssr158286 19 11055818 to 11055829 11 - TSS region transcription start site region 158286
Tssr158287 19 11055850 to 11055881 31 - TSS region transcription start site region 158287
Ms4a8a 19 11067471 to 11081102 13631 - protein coding gene membrane-spanning 4-domains, subfamily A, member 8A
Tssr158288 19 11081034 to 11081045 11 - TSS region transcription start site region 158288
Tssr158289 19 11081066 to 11081077 11 - TSS region transcription start site region 158289
Tssr158290 19 11081088 to 11081111 23 - TSS region transcription start site region 158290
Gm336 19 11090598 to 11092077 1479 - pseudogene predicted pseudogene 336
Cpgi10631 19 11092195 to 11092520 325 CpG island CpG island 10631
1700017D01Rik 19 11096816 to 11130876 34060 - protein coding gene RIKEN cDNA 1700017D01 gene
Tssr158291 19 11096904 to 11096906 2 - TSS region transcription start site region 158291
Cpgi10632 19 11121003 to 11121515 512 CpG island CpG island 10632
Tssr155154 19 11121351 to 11121370 19 + TSS region transcription start site region 155154
Tssr155155 19 11121383 to 11121411 28 + TSS region transcription start site region 155155
Gm6501 19 11121510 to 11122425 915 + pseudogene predicted gene 6501
Tssr158292 19 11130778 to 11130784 6 - TSS region transcription start site region 158292
Tssr158293 19 11130805 to 11130814 9 - TSS region transcription start site region 158293
Tssr158294 19 11130819 to 11130859 40 - TSS region transcription start site region 158294
1700025F22Rik 19 11139664 to 11165320 25656 - protein coding gene RIKEN cDNA 1700025F22 gene
Tssr158295 19 11165298 to 11165336 38 - TSS region transcription start site region 158295
Tssr158296 19 11165341 to 11165350 9 - TSS region transcription start site region 158296
Tssr158297 19 11165352 to 11165356 4 - TSS region transcription start site region 158297
Tssr158298 19 11165563 to 11165570 7 - TSS region transcription start site region 158298
Tssr5446 19 11165597 to 11165604 7 - TSS region transcription start site region 5446
Ms4a13 19 11169418 to 11196737 27319 - protein coding gene membrane-spanning 4-domains, subfamily A, member 13
Tssr158299 19 11196684 to 11196692 8 - TSS region transcription start site region 158299
Tssr158300 19 11196700 to 11196742 42 - TSS region transcription start site region 158300
4930526L06Rik 19 11196817 to 11299884 103067 + antisense lncRNA gene RIKEN cDNA 4930526L06 gene
Ms4a12 19 11215010 to 11230540 15530 - protein coding gene membrane-spanning 4-domains, subfamily A, member 12
Tssr158301 19 11232433 to 11232459 26 - TSS region transcription start site region 158301
Ms4a1 19 11250603 to 11266151 15548 - protein coding gene membrane-spanning 4-domains, subfamily A, member 1
Tssr158302 19 11266105 to 11266114 9 - TSS region transcription start site region 158302
Tssr158303 19 11266122 to 11266161 39 - TSS region transcription start site region 158303
Tssr158304 19 11266168 to 11266197 29 - TSS region transcription start site region 158304
Ms4a5 19 11273866 to 11283895 10029 - protein coding gene membrane-spanning 4-domains, subfamily A, member 5
Tssr158305 19 11277944 to 11277953 9 - TSS region transcription start site region 158305
Tssr158306 19 11278689 to 11278699 10 - TSS region transcription start site region 158306
Tssr5447 19 11279404 to 11279417 13 - TSS region transcription start site region 5447
Tssr158307 19 11279432 to 11279444 12 - TSS region transcription start site region 158307
Tssr158308 19 11279630 to 11279637 7 - TSS region transcription start site region 158308
Tssr158309 19 11279646 to 11279659 13 - TSS region transcription start site region 158309
Tssr158310 19 11279691 to 11279696 5 - TSS region transcription start site region 158310
Tssr158311 19 11283866 to 11283879 13 - TSS region transcription start site region 158311
Tssr158312 19 11283881 to 11283884 3 - TSS region transcription start site region 158312
Tssr155156 19 11292408 to 11292421 13 + TSS region transcription start site region 155156
Tssr155157 19 11292423 to 11292437 14 + TSS region transcription start site region 155157
Ms4a14 19 11301249 to 11314454 13205 - protein coding gene membrane-spanning 4-domains, subfamily A, member 14
Tssr158313 19 11302203 to 11302215 12 - TSS region transcription start site region 158313
Tssr158314 19 11304325 to 11304336 11 - TSS region transcription start site region 158314
Tssr158315 19 11304363 to 11304374 11 - TSS region transcription start site region 158315
Tssr158316 19 11304476 to 11304481 5 - TSS region transcription start site region 158316
Tssr158317 19 11314423 to 11314434 11 - TSS region transcription start site region 158317
Tssr158318 19 11314443 to 11314461 18 - TSS region transcription start site region 158318
Ms4a7 19 11321039 to 11336146 15107 - protein coding gene membrane-spanning 4-domains, subfamily A, member 7
Tssr155158 19 11321406 to 11321418 12 + TSS region transcription start site region 155158
Tssr158319 19 11321574 to 11321585 11 - TSS region transcription start site region 158319
Tssr158320 19 11324088 to 11324100 12 - TSS region transcription start site region 158320
Tssr158321 19 11324152 to 11324174 22 - TSS region transcription start site region 158321
Tssr158322 19 11324225 to 11324241 16 - TSS region transcription start site region 158322
Tssr158323 19 11324524 to 11324545 21 - TSS region transcription start site region 158323
Tssr158324 19 11324555 to 11324638 83 - TSS region transcription start site region 158324
Tssr158325 19 11326795 to 11326816 21 - TSS region transcription start site region 158325
Tssr158326 19 11326837 to 11326873 36 - TSS region transcription start site region 158326
Tssr158327 19 11326913 to 11326928 15 - TSS region transcription start site region 158327
Tssr158328 19 11327104 to 11327118 14 - TSS region transcription start site region 158328
Tssr158329 19 11327128 to 11327139 11 - TSS region transcription start site region 158329
Tssr158330 19 11327153 to 11327165 12 - TSS region transcription start site region 158330
Tssr158331 19 11327237 to 11327248 11 - TSS region transcription start site region 158331
Tssr158332 19 11327958 to 11327982 24 - TSS region transcription start site region 158332
Tssr158333 19 11327987 to 11328013 26 - TSS region transcription start site region 158333
Tssr158334 19 11330372 to 11330387 15 - TSS region transcription start site region 158334
Tssr155159 19 11333204 to 11333240 36 + TSS region transcription start site region 155159
Tssr158335 19 11334374 to 11334399 25 - TSS region transcription start site region 158335
Tssr158336 19 11336052 to 11336069 17 - TSS region transcription start site region 158336
Tssr158337 19 11336074 to 11336087 13 - TSS region transcription start site region 158337
Tssr158338 19 11336107 to 11336124 17 - TSS region transcription start site region 158338
Tssr155160 19 11356090 to 11356103 13 + TSS region transcription start site region 155160
Tssr155161 19 11362273 to 11362288 15 + TSS region transcription start site region 155161
Gm28935 19 11362278 to 11363890 1612 + lincRNA gene predicted gene 28935