Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:6251452-7752715

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41664 18 6240814 to 6268387 27573 + lncRNA gene predicted gene, 41664
Tssr149960 18 6332587 to 6332609 22 + TSS region transcription start site region 149960
Rpl27-ps3 18 6332632 to 6333042 410 + pseudogene ribosomal protein L27, pseudogene 3
Gm49986 18 6368360 to 6368797 437 + pseudogene predicted gene, 49986
Gm6291 18 6371352 to 6371660 308 - pseudogene predicted gene 6291
Epc1 18 6435951 to 6516108 80157 - protein coding gene enhancer of polycomb homolog 1
Cpgi9678 18 6489849 to 6491322 1473 CpG island CpG island 9678
Tssr149961 18 6490134 to 6490165 31 + TSS region transcription start site region 149961
Gm28529 18 6490143 to 6496962 6819 + antisense lncRNA gene predicted gene 28529
Mir1893 18 6490564 to 6490646 82 - miRNA gene microRNA 1893
Tssr152357 18 6490702 to 6490738 36 - TSS region transcription start site region 152357
Tssr152358 18 6490778 to 6490793 15 - TSS region transcription start site region 152358
Tssr152359 18 6490808 to 6490869 61 - TSS region transcription start site region 152359
Tssr152360 18 6490877 to 6490898 21 - TSS region transcription start site region 152360
Tssr152361 18 6490901 to 6490926 25 - TSS region transcription start site region 152361
Tssr152362 18 6510715 to 6510722 7 - TSS region transcription start site region 152362
Tssr152363 18 6515134 to 6515140 6 - TSS region transcription start site region 152363
Cpgi9679 18 6515978 to 6516607 629 CpG island CpG island 9679
Tssr152364 18 6516067 to 6516083 16 - TSS region transcription start site region 152364
Tssr152365 18 6516089 to 6516106 17 - TSS region transcription start site region 152365
Tssr149962 18 6516231 to 6516252 21 + TSS region transcription start site region 149962
Tssr149963 18 6516668 to 6516672 4 + TSS region transcription start site region 149963
Gm7464 18 6557130 to 6557796 666 + pseudogene predicted gene 7464
Tssr149964 18 6557152 to 6557158 6 + TSS region transcription start site region 149964
Tssr152366 18 6595474 to 6595479 5 - TSS region transcription start site region 152366
D18Mit220 18 6602571 to 6602646 75 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 220
Tssr149965 18 6603627 to 6603633 6 + TSS region transcription start site region 149965
4921524L21Rik 18 6603629 to 6638970 35341 + protein coding gene RIKEN cDNA 4921524L21 gene
Gm50077 18 6687843 to 6691317 3474 - pseudogene predicted gene, 50077
Tssr149966 18 6733733 to 6733749 16 + TSS region transcription start site region 149966
Tssr149967 18 6733779 to 6733788 9 + TSS region transcription start site region 149967
Tssr149968 18 6733893 to 6733898 5 + TSS region transcription start site region 149968
Tssr149969 18 6733953 to 6733960 7 + TSS region transcription start site region 149969
Gm7466 18 6760516 to 6760959 443 - pseudogene predicted gene 7466
Cpgi9680 18 6764811 to 6765629 818 CpG island CpG island 9680
Tssr149970 18 6765035 to 6765050 15 + TSS region transcription start site region 149970
Tssr149971 18 6765086 to 6765098 12 + TSS region transcription start site region 149971
Tssr149972 18 6765117 to 6765123 6 + TSS region transcription start site region 149972
Rab18 18 6765167 to 6791606 26439 + protein coding gene RAB18, member RAS oncogene family
Tssr149973 18 6765171 to 6765220 49 + TSS region transcription start site region 149973
Tssr149974 18 6765226 to 6765254 28 + TSS region transcription start site region 149974
Tssr149975 18 6765282 to 6765297 15 + TSS region transcription start site region 149975
Gm50081 18 6788768 to 6792137 3369 + sense overlapping lncRNA gene predicted gene, 50081
Tssr149976 18 6788906 to 6788911 5 + TSS region transcription start site region 149976
Gm2350 18 6910459 to 6936621 26162 - unclassified gene predicted gene 2350
Mkx 18 6934966 to 7004779 69813 - protein coding gene mohawk homeobox
Tssr152367 18 6983603 to 6983607 4 - TSS region transcription start site region 152367
Cpgi9681 18 7000569 to 7000748 179 CpG island CpG island 9681
Cpgi9682 18 7001452 to 7002715 1263 CpG island CpG island 9682
Cpgi9683 18 7003380 to 7005403 2023 CpG island CpG island 9683
Tssr152368 18 7004717 to 7004733 16 - TSS region transcription start site region 152368
Gm46633 18 7004963 to 7006405 1442 + lncRNA gene predicted gene, 46633
Gm10350 18 7043909 to 7044135 226 - pseudogene predicted gene 10350
Armc4 18 7088209 to 7297936 209727 - protein coding gene armadillo repeat containing 4
Gm18581 18 7107181 to 7108183 1002 - pseudogene predicted gene, 18581
D18Mit18 18 7116121 to 7116255 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 18
4930415O11Rik 18 7150343 to 7151776 1433 unclassified gene RIKEN cDNA 4930415O11 gene
Tssr152369 18 7273578 to 7273587 9 - TSS region transcription start site region 152369
Tssr152370 18 7297064 to 7297072 8 - TSS region transcription start site region 152370
Cpgi9684 18 7297759 to 7298044 285 CpG island CpG island 9684
Gm34979 18 7332445 to 7346299 13854 - lncRNA gene predicted gene, 34979
Tssr152371 18 7346010 to 7346014 4 - TSS region transcription start site region 152371
Mpp7 18 7347959 to 7626866 278907 - protein coding gene membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
Tssr152372 18 7373736 to 7373740 4 - TSS region transcription start site region 152372
D18Mit168 18 7464450 to 7464545 95 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 168
Gm18948 18 7548987 to 7549581 594 + pseudogene predicted gene, 18948
Fabp5l2 18 7581516 to 7581920 404 + pseudogene fatty acid binding protein 5-like 2
Tssr152373 18 7583781 to 7583788 7 - TSS region transcription start site region 152373
Tssr5241 18 7585699 to 7585706 7 + TSS region transcription start site region 5241
Tssr152374 18 7608331 to 7608335 4 - TSS region transcription start site region 152374
Cpgi9685 18 7608679 to 7608967 288 CpG island CpG island 9685
Tssr152375 18 7610599 to 7610604 5 - TSS region transcription start site region 152375
Tssr149977 18 7613980 to 7613990 10 + TSS region transcription start site region 149977
Cpgi9686 18 7626159 to 7627213 1054 CpG island CpG island 9686
Tssr152376 18 7626777 to 7626792 15 - TSS region transcription start site region 152376
Tssr152377 18 7626809 to 7626880 71 - TSS region transcription start site region 152377
Gm18763 18 7684530 to 7692726 8196 - pseudogene predicted gene, 18763
Cpgi9687 18 7692737 to 7693448 711 CpG island CpG island 9687
Tssr152378 18 7703655 to 7703659 4 - TSS region transcription start site region 152378