Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:57786721-59886751

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35751 18 57803013 to 57828506 25493 + protein coding gene predicted gene, 35751
9330166H04Rik 18 57877714 to 57878511 797 unclassified non-coding RNA gene RIKEN cDNA 9330166H04 gene
Cpgi10080 18 57877727 to 57879761 2034 CpG island CpG island 10080
Tssr5332 18 57878291 to 57878309 18 + TSS region transcription start site region 5332
Tssr151207 18 57878596 to 57878607 11 + TSS region transcription start site region 151207
Tssr151208 18 57878620 to 57878637 17 + TSS region transcription start site region 151208
Slc12a2 18 57878678 to 57946821 68143 + protein coding gene solute carrier family 12, member 2
Pwgrq8 18 57888327 to 69216071 11327744 QTL pre-weaning growth rate QTL 8
Tssr5333 18 57911998 to 57912018 20 + TSS region transcription start site region 5333
2210411G17Rik 18 57949906 to 57952095 2189 unclassified gene RIKEN cDNA 2210411G17 gene
2210409O19Rik 18 57954242 to 57955291 1049 unclassified gene RIKEN cDNA 2210409O19 gene
D18Mit181 18 57994795 to 57994941 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 181
Fbn2 18 58008623 to 58209926 201303 - protein coding gene fibrillin 2
Tssr5334 18 58009104 to 58009108 4 - TSS region transcription start site region 5334
Tssr153415 18 58009135 to 58009144 9 - TSS region transcription start site region 153415
Tssr153416 18 58072810 to 58072824 14 - TSS region transcription start site region 153416
Tssr153417 18 58072844 to 58072852 8 - TSS region transcription start site region 153417
Tssr153418 18 58072868 to 58072875 7 - TSS region transcription start site region 153418
5930427J20Rik 18 58091069 to 58092484 1415 unclassified gene RIKEN cDNA 5930427J20 gene
Tssr153419 18 58097058 to 58097061 3 - TSS region transcription start site region 153419
Tssr151209 18 58146367 to 58146368 1 + TSS region transcription start site region 151209
Tssr153420 18 58168355 to 58168360 5 - TSS region transcription start site region 153420
D330023I04Rik 18 58204138 to 58207794 3656 unclassified gene RIKEN cDNA D330023I04 gene
Cpgi10081 18 58209046 to 58211276 2230 CpG island CpG island 10081
Tssr153421 18 58209133 to 58209148 15 - TSS region transcription start site region 153421
Tssr5335 18 58209959 to 58209982 23 - TSS region transcription start site region 5335
Tssr153422 18 58210056 to 58210067 11 - TSS region transcription start site region 153422
Tssr5336 18 58210092 to 58210109 17 - TSS region transcription start site region 5336
Tssr5337 18 58210267 to 58210269 2 - TSS region transcription start site region 5337
Gm41741 18 58210295 to 58215455 5160 + lncRNA gene predicted gene, 41741
Tssr153423 18 58210408 to 58210419 11 - TSS region transcription start site region 153423
Tssr153424 18 58210439 to 58210457 18 - TSS region transcription start site region 153424
Tssr5338 18 58210522 to 58210569 47 - TSS region transcription start site region 5338
Tssr153425 18 58210570 to 58210573 3 - TSS region transcription start site region 153425
Tssr5339 18 58210585 to 58210594 9 - TSS region transcription start site region 5339
Tssr153426 18 58210731 to 58210744 13 - TSS region transcription start site region 153426
Tssr153427 18 58210763 to 58210771 8 - TSS region transcription start site region 153427
Gm26507 18 58215511 to 58222911 7400 + lincRNA gene predicted gene, 26507
Gm25660 18 58231472 to 58231575 103 - rRNA gene predicted gene, 25660
D18Mit52 18 58337615 to 58337755 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 52
Tssr151210 18 58408900 to 58408947 47 + TSS region transcription start site region 151210
Cpgi10082 18 58555693 to 58555992 299 CpG island CpG island 10082
Tssr151211 18 58555958 to 58556009 51 + TSS region transcription start site region 151211
Tssr151212 18 58556011 to 58556047 36 + TSS region transcription start site region 151212
Tssr151213 18 58556062 to 58556073 11 + TSS region transcription start site region 151213
Tssr151214 18 58556076 to 58556081 5 + TSS region transcription start site region 151214
Tssr151215 18 58556090 to 58556100 10 + TSS region transcription start site region 151215
Tssr151216 18 58556200 to 58556216 16 + TSS region transcription start site region 151216
Tssr151217 18 58556224 to 58556246 22 + TSS region transcription start site region 151217
Slc27a6 18 58556257 to 58612773 56516 + protein coding gene solute carrier family 27 (fatty acid transporter), member 6
Cpgi10083 18 58556666 to 58556897 231 CpG island CpG island 10083
Tssr151218 18 58572015 to 58572033 18 + TSS region transcription start site region 151218
Tssr151219 18 58612827 to 58612832 5 + TSS region transcription start site region 151219
Gm23270 18 58615359 to 58615489 130 - snoRNA gene predicted gene, 23270
Cpgi10084 18 58659082 to 58660104 1022 CpG island CpG island 10084
Tssr151220 18 58659443 to 58659522 79 + TSS region transcription start site region 151220
Isoc1 18 58659482 to 58679570 20088 + protein coding gene isochorismatase domain containing 1
Tssr151221 18 58667759 to 58667764 5 + TSS region transcription start site region 151221
Tssr151222 18 58677921 to 58677939 18 + TSS region transcription start site region 151222
Tssr151223 18 58678017 to 58678040 23 + TSS region transcription start site region 151223
Tssr151224 18 58725653 to 58725661 8 + TSS region transcription start site region 151224
D18Mit205 18 58786994 to 58787117 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 205
Cpgi10085 18 58835880 to 58838073 2193 CpG island CpG island 10085
Tssr151225 18 58836152 to 58836182 30 + TSS region transcription start site region 151225
Tssr151226 18 58836184 to 58836209 25 + TSS region transcription start site region 151226
Tssr151227 18 58836321 to 58836339 18 + TSS region transcription start site region 151227
Tssr151228 18 58836350 to 58836374 24 + TSS region transcription start site region 151228
Tssr151229 18 58836382 to 58836396 14 + TSS region transcription start site region 151229
Tssr151230 18 58836721 to 58836751 30 + TSS region transcription start site region 151230
Adamts19 18 58836764 to 59053678 216914 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
Gm18088 18 58930184 to 58931119 935 - pseudogene predicted gene, 18088
2610317O13Rik 18 58963573 to 58964689 1116 unclassified gene RIKEN cDNA 2610317O13 gene
Minar2 18 59062248 to 59076962 14714 + protein coding gene membrane integral NOTCH2 associated receptor 2
Tssr5340 18 59062312 to 59062338 26 + TSS region transcription start site region 5340
Tssr151231 18 59062344 to 59062376 32 + TSS region transcription start site region 151231
Tssr151232 18 59062379 to 59062389 10 + TSS region transcription start site region 151232
Tssr151233 18 59062488 to 59062538 50 + TSS region transcription start site region 151233
Tssr151234 18 59063689 to 59063700 11 + TSS region transcription start site region 151234
Tssr151235 18 59075588 to 59075599 11 + TSS region transcription start site region 151235
Cpgi10086 18 59174664 to 59176801 2137 CpG island CpG island 10086
Tssr151236 18 59175333 to 59175406 73 + TSS region transcription start site region 151236
Chsy3 18 59175401 to 59410446 235045 + protein coding gene chondroitin sulfate synthase 3
Tssr151237 18 59175408 to 59175463 55 + TSS region transcription start site region 151237
Tssr151238 18 59175472 to 59175493 21 + TSS region transcription start site region 151238
Cpgi10087 18 59179432 to 59179678 246 CpG island CpG island 10087
Tssr151239 18 59240022 to 59240025 3 + TSS region transcription start site region 151239
Gm19051 18 59245193 to 59245906 713 - pseudogene predicted gene, 19051
Cpgi10088 18 59408894 to 59409179 285 CpG island CpG island 10088
Mir6355 18 59579630 to 59579735 105 + miRNA gene microRNA 6355
Gm26028 18 59738064 to 59738357 293 - unclassified non-coding RNA gene predicted gene, 26028
Gm8697 18 59774108 to 59774471 363 - pseudogene predicted gene 8697
Tssr153428 18 59774499 to 59774502 3 - TSS region transcription start site region 153428
Gm38695 18 59825443 to 59843775 18332 - lncRNA gene predicted gene, 38695
Gm35234 18 59854569 to 59863934 9365 - lncRNA gene predicted gene, 35234
Gm41742 18 59865105 to 59876844 11739 - lncRNA gene predicted gene, 41742