Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:57365295-59060455

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc41 18 20820637 to 57457636 36636999 QTL susceptibility to lung cancer 41
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
Prrc1 18 57354733 to 57392719 37986 + protein coding gene proline-rich coiled-coil 1
Tssr151196 18 57373878 to 57373887 9 + TSS region transcription start site region 151196
Gm19500 18 57405270 to 57415246 9976 + unclassified gene predicted gene, 19500
Tssr5329 18 57405298 to 57405326 28 + TSS region transcription start site region 5329
Tssr151197 18 57405331 to 57405358 27 + TSS region transcription start site region 151197
Tssr151198 18 57405397 to 57405432 35 + TSS region transcription start site region 151198
Tssr153409 18 57418228 to 57418235 7 - TSS region transcription start site region 153409
Gm34982 18 57419747 to 57429760 10013 + lncRNA gene predicted gene, 34982
Eae18 18 57457487 to 82586603 25129116 QTL experimental allergic encephalomyelitis susceptibility 18
D18Mit124 18 57457487 to 57457636 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 124
Tssr151199 18 57468470 to 57468477 7 + TSS region transcription start site region 151199
Tssr151200 18 57468478 to 57468541 63 + TSS region transcription start site region 151200
Ctxn3 18 57468516 to 57478133 9617 + protein coding gene cortexin 3
Tssr151201 18 57468547 to 57468560 13 + TSS region transcription start site region 151201
Tssr151202 18 57468669 to 57468691 22 + TSS region transcription start site region 151202
Tssr5330 18 57468696 to 57468716 20 + TSS region transcription start site region 5330
Tssr151203 18 57468721 to 57468730 9 + TSS region transcription start site region 151203
Tssr151204 18 57472463 to 57472480 17 + TSS region transcription start site region 151204
1700066O22Rik 18 57504422 to 57533752 29330 - lncRNA gene RIKEN cDNA 1700066O22 gene
Tssr153410 18 57533715 to 57533720 5 - TSS region transcription start site region 153410
Tssr153411 18 57533749 to 57533761 12 - TSS region transcription start site region 153411
Ccdc192 18 57533780 to 57731065 197285 + protein coding gene coiled-coil domain containing 192
Tssr151205 18 57533842 to 57533866 24 + TSS region transcription start site region 151205
4930511M06Rik 18 57545361 to 57552397 7036 - lncRNA gene RIKEN cDNA 4930511M06 gene
Tssr153412 18 57551873 to 57551905 32 - TSS region transcription start site region 153412
Tssr153413 18 57552337 to 57552348 11 - TSS region transcription start site region 153413
Tssr153414 18 57552368 to 57552415 47 - TSS region transcription start site region 153414
Gm18740 18 57588008 to 57588811 803 - pseudogene predicted gene, 18740
Tssr5331 18 57615569 to 57615571 2 + TSS region transcription start site region 5331
2210409D07Rik 18 57632079 to 57638585 6506 - lncRNA gene RIKEN cDNA 2210409D07 gene
Tssr151206 18 57658038 to 57658041 3 + TSS region transcription start site region 151206
Gm26038 18 57669453 to 57669558 105 - snRNA gene predicted gene, 26038
Gm44491 18 57681814 to 57681909 95 + miRNA gene predicted gene, 44491
Gm19519 18 57774166 to 57779995 5829 - unclassified gene predicted gene, 19519
Gm35751 18 57803013 to 57828506 25493 + protein coding gene predicted gene, 35751
9330166H04Rik 18 57877714 to 57878511 797 unclassified non-coding RNA gene RIKEN cDNA 9330166H04 gene
Cpgi10080 18 57877727 to 57879761 2034 CpG island CpG island 10080
Tssr5332 18 57878291 to 57878309 18 + TSS region transcription start site region 5332
Tssr151207 18 57878596 to 57878607 11 + TSS region transcription start site region 151207
Tssr151208 18 57878620 to 57878637 17 + TSS region transcription start site region 151208
Slc12a2 18 57878678 to 57946821 68143 + protein coding gene solute carrier family 12, member 2
Pwgrq8 18 57888327 to 69216071 11327744 QTL pre-weaning growth rate QTL 8
Tssr5333 18 57911998 to 57912018 20 + TSS region transcription start site region 5333
2210411G17Rik 18 57949906 to 57952095 2189 unclassified gene RIKEN cDNA 2210411G17 gene
2210409O19Rik 18 57954242 to 57955291 1049 unclassified gene RIKEN cDNA 2210409O19 gene
D18Mit181 18 57994795 to 57994941 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 181
Fbn2 18 58008623 to 58209926 201303 - protein coding gene fibrillin 2
Tssr5334 18 58009104 to 58009108 4 - TSS region transcription start site region 5334
Tssr153415 18 58009135 to 58009144 9 - TSS region transcription start site region 153415
Tssr153416 18 58072810 to 58072824 14 - TSS region transcription start site region 153416
Tssr153417 18 58072844 to 58072852 8 - TSS region transcription start site region 153417
Tssr153418 18 58072868 to 58072875 7 - TSS region transcription start site region 153418
5930427J20Rik 18 58091069 to 58092484 1415 unclassified gene RIKEN cDNA 5930427J20 gene
Tssr153419 18 58097058 to 58097061 3 - TSS region transcription start site region 153419
Tssr151209 18 58146367 to 58146368 1 + TSS region transcription start site region 151209
Tssr153420 18 58168355 to 58168360 5 - TSS region transcription start site region 153420
D330023I04Rik 18 58204138 to 58207794 3656 unclassified gene RIKEN cDNA D330023I04 gene
Cpgi10081 18 58209046 to 58211276 2230 CpG island CpG island 10081
Tssr153421 18 58209133 to 58209148 15 - TSS region transcription start site region 153421
Tssr5335 18 58209959 to 58209982 23 - TSS region transcription start site region 5335
Tssr153422 18 58210056 to 58210067 11 - TSS region transcription start site region 153422
Tssr5336 18 58210092 to 58210109 17 - TSS region transcription start site region 5336
Tssr5337 18 58210267 to 58210269 2 - TSS region transcription start site region 5337
Gm41741 18 58210295 to 58215455 5160 + lncRNA gene predicted gene, 41741
Tssr153423 18 58210408 to 58210419 11 - TSS region transcription start site region 153423
Tssr153424 18 58210439 to 58210457 18 - TSS region transcription start site region 153424
Tssr5338 18 58210522 to 58210569 47 - TSS region transcription start site region 5338
Tssr153425 18 58210570 to 58210573 3 - TSS region transcription start site region 153425
Tssr5339 18 58210585 to 58210594 9 - TSS region transcription start site region 5339
Tssr153426 18 58210731 to 58210744 13 - TSS region transcription start site region 153426
Tssr153427 18 58210763 to 58210771 8 - TSS region transcription start site region 153427
Gm26507 18 58215511 to 58222911 7400 + lincRNA gene predicted gene, 26507
Gm25660 18 58231472 to 58231575 103 - rRNA gene predicted gene, 25660
D18Mit52 18 58337615 to 58337755 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 52
Tssr151210 18 58408900 to 58408947 47 + TSS region transcription start site region 151210
Cpgi10082 18 58555693 to 58555992 299 CpG island CpG island 10082
Tssr151211 18 58555958 to 58556009 51 + TSS region transcription start site region 151211
Tssr151212 18 58556011 to 58556047 36 + TSS region transcription start site region 151212
Tssr151213 18 58556062 to 58556073 11 + TSS region transcription start site region 151213
Tssr151214 18 58556076 to 58556081 5 + TSS region transcription start site region 151214
Tssr151215 18 58556090 to 58556100 10 + TSS region transcription start site region 151215
Tssr151216 18 58556200 to 58556216 16 + TSS region transcription start site region 151216
Tssr151217 18 58556224 to 58556246 22 + TSS region transcription start site region 151217
Slc27a6 18 58556257 to 58612773 56516 + protein coding gene solute carrier family 27 (fatty acid transporter), member 6
Cpgi10083 18 58556666 to 58556897 231 CpG island CpG island 10083
Tssr151218 18 58572015 to 58572033 18 + TSS region transcription start site region 151218
Tssr151219 18 58612827 to 58612832 5 + TSS region transcription start site region 151219
Gm23270 18 58615359 to 58615489 130 - snoRNA gene predicted gene, 23270
Cpgi10084 18 58659082 to 58660104 1022 CpG island CpG island 10084
Tssr151220 18 58659443 to 58659522 79 + TSS region transcription start site region 151220
Isoc1 18 58659482 to 58679570 20088 + protein coding gene isochorismatase domain containing 1
Tssr151221 18 58667759 to 58667764 5 + TSS region transcription start site region 151221
Tssr151222 18 58677921 to 58677939 18 + TSS region transcription start site region 151222
Tssr151223 18 58678017 to 58678040 23 + TSS region transcription start site region 151223
Tssr151224 18 58725653 to 58725661 8 + TSS region transcription start site region 151224
D18Mit205 18 58786994 to 58787117 123 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 205
Cpgi10085 18 58835880 to 58838073 2193 CpG island CpG island 10085
Tssr151225 18 58836152 to 58836182 30 + TSS region transcription start site region 151225
Tssr151226 18 58836184 to 58836209 25 + TSS region transcription start site region 151226
Tssr151227 18 58836321 to 58836339 18 + TSS region transcription start site region 151227
Tssr151228 18 58836350 to 58836374 24 + TSS region transcription start site region 151228
Tssr151229 18 58836382 to 58836396 14 + TSS region transcription start site region 151229
Tssr151230 18 58836721 to 58836751 30 + TSS region transcription start site region 151230
Adamts19 18 58836764 to 59053678 216914 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
Gm18088 18 58930184 to 58931119 935 - pseudogene predicted gene, 18088
2610317O13Rik 18 58963573 to 58964689 1116 unclassified gene RIKEN cDNA 2610317O13 gene