Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:56525361-58572397

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc41 18 20820637 to 57457636 36636999 QTL susceptibility to lung cancer 41
Sstapa1 18 46408479 to 57457636 11049157 QTL suseptibility to Staphylococcus aureus infection 1
Aldh7a1 18 56524722 to 56572939 48217 - protein coding gene aldehyde dehydrogenase family 7, member A1
Mir1258 18 56538139 to 56538198 59 + miRNA gene microRNA 1258
Tssr5326 18 56546832 to 56546835 3 - TSS region transcription start site region 5326
Cpgi10069 18 56561996 to 56562751 755 CpG island CpG island 10069
Tssr153381 18 56562187 to 56562209 22 - TSS region transcription start site region 153381
Tssr153382 18 56562215 to 56562254 39 - TSS region transcription start site region 153382
Tssr153383 18 56562261 to 56562283 22 - TSS region transcription start site region 153383
Tssr153384 18 56562501 to 56562535 34 - TSS region transcription start site region 153384
Phax 18 56562569 to 56587712 25143 + protein coding gene phosphorylated adaptor for RNA export
Cpgi10070 18 56572613 to 56573673 1060 CpG island CpG island 10070
Tssr153385 18 56572866 to 56572882 16 - TSS region transcription start site region 153385
Tssr153386 18 56572888 to 56572945 57 - TSS region transcription start site region 153386
Tssr151147 18 56573002 to 56573039 37 + TSS region transcription start site region 151147
Tssr5327 18 56588338 to 56588339 1 + TSS region transcription start site region 5327
Tssr151148 18 56588342 to 56588359 17 + TSS region transcription start site region 151148
Tex43 18 56588350 to 56594782 6432 + protein coding gene testis expressed 43
Cpgi10071 18 56594575 to 56594870 295 CpG island CpG island 10071
Cpgi10072 18 56620993 to 56621244 251 CpG island CpG island 10072
D18Mit122 18 56661558 to 56661706 148 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 122
Sstapa2 18 56661558 to 66819414 10157856 QTL suseptibility to Staphylococcus aureus infection 2
Tssr153387 18 56675542 to 56675553 11 - TSS region transcription start site region 153387
Tssr151149 18 56675691 to 56675698 7 + TSS region transcription start site region 151149
Tssr151150 18 56676281 to 56676286 5 + TSS region transcription start site region 151150
Tssr151151 18 56676607 to 56676619 12 + TSS region transcription start site region 151151
Tssr151152 18 56676621 to 56676624 3 + TSS region transcription start site region 151152
Tssr151153 18 56676649 to 56676660 11 + TSS region transcription start site region 151153
Tssr151154 18 56676662 to 56676694 32 + TSS region transcription start site region 151154
Tssr151155 18 56676698 to 56676725 27 + TSS region transcription start site region 151155
Tssr153388 18 56677816 to 56677822 6 - TSS region transcription start site region 153388
Tssr151156 18 56677825 to 56677837 12 + TSS region transcription start site region 151156
Cpgi10073 18 56678615 to 56678799 184 CpG island CpG island 10073
Tssr151157 18 56678642 to 56678668 26 + TSS region transcription start site region 151157
Gm41738 18 56688352 to 56689098 746 - lncRNA gene predicted gene, 41738
Cpgi10074 18 56707265 to 56709339 2074 CpG island CpG island 10074
Tssr153389 18 56707389 to 56707420 31 - TSS region transcription start site region 153389
Tssr153390 18 56707429 to 56707446 17 - TSS region transcription start site region 153390
Tssr151158 18 56707725 to 56707940 215 + TSS region transcription start site region 151158
Lmnb1 18 56707813 to 56753424 45611 + protein coding gene lamin B1
Tssr151159 18 56707941 to 56707988 47 + TSS region transcription start site region 151159
Tssr153391 18 56708305 to 56708323 18 - TSS region transcription start site region 153391
Tssr153392 18 56708862 to 56708892 30 - TSS region transcription start site region 153392
Tssr151160 18 56732671 to 56732676 5 + TSS region transcription start site region 151160
Tssr151161 18 56733144 to 56733166 22 + TSS region transcription start site region 151161
Tssr151162 18 56733181 to 56733186 5 + TSS region transcription start site region 151162
Tssr151163 18 56733190 to 56733210 20 + TSS region transcription start site region 151163
Tssr151164 18 56733211 to 56733227 16 + TSS region transcription start site region 151164
Tssr151165 18 56733229 to 56733249 20 + TSS region transcription start site region 151165
Tssr151166 18 56733754 to 56733759 5 + TSS region transcription start site region 151166
Tssr153393 18 56733847 to 56733856 9 - TSS region transcription start site region 153393
Tssr5328 18 56733873 to 56733881 8 - TSS region transcription start site region 5328
Tssr151167 18 56734017 to 56734028 11 + TSS region transcription start site region 151167
Tssr151168 18 56734068 to 56734082 14 + TSS region transcription start site region 151168
Tssr151169 18 56734089 to 56734097 8 + TSS region transcription start site region 151169
Tssr151170 18 56737644 to 56737692 48 + TSS region transcription start site region 151170
Tssr151171 18 56746542 to 56746545 3 + TSS region transcription start site region 151171
March3 18 56761716 to 56925548 163832 - protein coding gene membrane-associated ring finger (C3HC4) 3
Tssr153394 18 56789284 to 56789287 3 - TSS region transcription start site region 153394
Tssr153395 18 56791492 to 56791496 4 - TSS region transcription start site region 153395
Gm15345 18 56795611 to 56807656 12045 + antisense lncRNA gene predicted gene 15345
Tssr153396 18 56846348 to 56846352 4 - TSS region transcription start site region 153396
Tssr153397 18 56853409 to 56853413 4 - TSS region transcription start site region 153397
Tssr153398 18 56863040 to 56863044 4 - TSS region transcription start site region 153398
Tssr153399 18 56867598 to 56867603 5 - TSS region transcription start site region 153399
Gm18087 18 56915360 to 56916089 729 - pseudogene predicted gene, 18087
Tssr153400 18 56919232 to 56919255 23 - TSS region transcription start site region 153400
Tssr153401 18 56921285 to 56921295 10 - TSS region transcription start site region 153401
Cpgi10075 18 56924645 to 56926110 1465 CpG island CpG island 10075
Tssr153402 18 56925509 to 56925522 13 - TSS region transcription start site region 153402
Gm34632 18 56925703 to 56967063 41360 + lncRNA gene predicted gene, 34632
Tssr151172 18 56925733 to 56925752 19 + TSS region transcription start site region 151172
Tssr151173 18 56925763 to 56925783 20 + TSS region transcription start site region 151173
Tssr151174 18 56927079 to 56927088 9 + TSS region transcription start site region 151174
Gm10536 18 56936260 to 56940518 4258 + lncRNA gene predicted gene 10536
C330018D20Rik 18 56955833 to 56975368 19535 - protein coding gene RIKEN cDNA C330018D20 gene
Tssr153403 18 56974057 to 56974067 10 - TSS region transcription start site region 153403
Tssr153404 18 56974128 to 56974153 25 - TSS region transcription start site region 153404
Cpgi10076 18 56975102 to 56975490 388 CpG island CpG island 10076
Tssr153405 18 56975333 to 56975376 43 - TSS region transcription start site region 153405
Tssr153406 18 56981181 to 56981221 40 - TSS region transcription start site region 153406
D18Mit238 18 57021757 to 57021878 121 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 238
Tssr151175 18 57095082 to 57095086 4 + TSS region transcription start site region 151175
Gm18739 18 57116730 to 57117281 551 - pseudogene predicted gene, 18739
Gm19486 18 57119571 to 57119930 359 - pseudogene predicted gene, 19486
Cpgi10077 18 57132728 to 57133531 803 CpG island CpG island 10077
Tssr151176 18 57132969 to 57133003 34 + TSS region transcription start site region 151176
Tssr151177 18 57133008 to 57133029 21 + TSS region transcription start site region 151177
Tssr151178 18 57133052 to 57133063 11 + TSS region transcription start site region 151178
Tssr151179 18 57133065 to 57133079 14 + TSS region transcription start site region 151179
Megf10 18 57133090 to 57297467 164377 + protein coding gene multiple EGF-like-domains 10
Tssr151180 18 57133366 to 57133369 3 + TSS region transcription start site region 151180
Tssr151181 18 57133373 to 57133422 49 + TSS region transcription start site region 151181
Tssr151182 18 57133447 to 57133462 15 + TSS region transcription start site region 151182
Tssr151183 18 57133466 to 57133504 38 + TSS region transcription start site region 151183
Tssr151184 18 57142618 to 57142628 10 + TSS region transcription start site region 151184
Tssr151185 18 57142670 to 57142694 24 + TSS region transcription start site region 151185
Tssr151186 18 57142705 to 57142710 5 + TSS region transcription start site region 151186
Tssr151187 18 57142714 to 57142735 21 + TSS region transcription start site region 151187
Tssr151188 18 57142738 to 57142755 17 + TSS region transcription start site region 151188
Tssr151189 18 57142756 to 57142765 9 + TSS region transcription start site region 151189
Tssr151190 18 57142782 to 57142796 14 + TSS region transcription start site region 151190
Tssr151191 18 57142823 to 57142828 5 + TSS region transcription start site region 151191
Tssr151192 18 57142837 to 57142858 21 + TSS region transcription start site region 151192
Gm18322 18 57148987 to 57149791 804 + pseudogene predicted gene, 18322
Tssr153407 18 57244114 to 57244123 9 - TSS region transcription start site region 153407
Cpgi10078 18 57287592 to 57288027 435 CpG island CpG island 10078
Tssr153408 18 57315118 to 57315121 3 - TSS region transcription start site region 153408
Gm18929 18 57335503 to 57338193 2690 + pseudogene predicted gene, 18929
Gm10266 18 57354214 to 57355627 1413 - unclassified gene predicted gene 10266
Cpgi10079 18 57354503 to 57355485 982 CpG island CpG island 10079
Tssr151193 18 57354716 to 57354727 11 + TSS region transcription start site region 151193
Prrc1 18 57354733 to 57392719 37986 + protein coding gene proline-rich coiled-coil 1
Tssr151194 18 57354733 to 57354797 64 + TSS region transcription start site region 151194
Tssr151195 18 57354836 to 57354845 9 + TSS region transcription start site region 151195
Tssr151196 18 57373878 to 57373887 9 + TSS region transcription start site region 151196
Gm19500 18 57405270 to 57415246 9976 + unclassified gene predicted gene, 19500
Tssr5329 18 57405298 to 57405326 28 + TSS region transcription start site region 5329
Tssr151197 18 57405331 to 57405358 27 + TSS region transcription start site region 151197
Tssr151198 18 57405397 to 57405432 35 + TSS region transcription start site region 151198
Tssr153409 18 57418228 to 57418235 7 - TSS region transcription start site region 153409
Gm34982 18 57419747 to 57429760 10013 + lncRNA gene predicted gene, 34982
Eae18 18 57457487 to 82586603 25129116 QTL experimental allergic encephalomyelitis susceptibility 18
D18Mit124 18 57457487 to 57457636 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 124
Tssr151199 18 57468470 to 57468477 7 + TSS region transcription start site region 151199
Tssr151200 18 57468478 to 57468541 63 + TSS region transcription start site region 151200
Ctxn3 18 57468516 to 57478133 9617 + protein coding gene cortexin 3
Tssr151201 18 57468547 to 57468560 13 + TSS region transcription start site region 151201
Tssr151202 18 57468669 to 57468691 22 + TSS region transcription start site region 151202
Tssr5330 18 57468696 to 57468716 20 + TSS region transcription start site region 5330
Tssr151203 18 57468721 to 57468730 9 + TSS region transcription start site region 151203
Tssr151204 18 57472463 to 57472480 17 + TSS region transcription start site region 151204
1700066O22Rik 18 57504422 to 57533752 29330 - lncRNA gene RIKEN cDNA 1700066O22 gene
Tssr153410 18 57533715 to 57533720 5 - TSS region transcription start site region 153410
Tssr153411 18 57533749 to 57533761 12 - TSS region transcription start site region 153411
Ccdc192 18 57533780 to 57731065 197285 + protein coding gene coiled-coil domain containing 192
Tssr151205 18 57533842 to 57533866 24 + TSS region transcription start site region 151205
4930511M06Rik 18 57545361 to 57552397 7036 - lncRNA gene RIKEN cDNA 4930511M06 gene
Tssr153412 18 57551873 to 57551905 32 - TSS region transcription start site region 153412
Tssr153413 18 57552337 to 57552348 11 - TSS region transcription start site region 153413
Tssr153414 18 57552368 to 57552415 47 - TSS region transcription start site region 153414
Gm18740 18 57588008 to 57588811 803 - pseudogene predicted gene, 18740
Tssr5331 18 57615569 to 57615571 2 + TSS region transcription start site region 5331
2210409D07Rik 18 57632079 to 57638585 6506 - lncRNA gene RIKEN cDNA 2210409D07 gene
Tssr151206 18 57658038 to 57658041 3 + TSS region transcription start site region 151206
Gm26038 18 57669453 to 57669558 105 - snRNA gene predicted gene, 26038
Gm44491 18 57681814 to 57681909 95 + miRNA gene predicted gene, 44491
Gm19519 18 57774166 to 57779995 5829 - unclassified gene predicted gene, 19519
Gm35751 18 57803013 to 57828506 25493 + protein coding gene predicted gene, 35751
9330166H04Rik 18 57877714 to 57878511 797 unclassified non-coding RNA gene RIKEN cDNA 9330166H04 gene
Cpgi10080 18 57877727 to 57879761 2034 CpG island CpG island 10080
Tssr5332 18 57878291 to 57878309 18 + TSS region transcription start site region 5332
Tssr151207 18 57878596 to 57878607 11 + TSS region transcription start site region 151207
Tssr151208 18 57878620 to 57878637 17 + TSS region transcription start site region 151208
Slc12a2 18 57878678 to 57946821 68143 + protein coding gene solute carrier family 12, member 2
Pwgrq8 18 57888327 to 69216071 11327744 QTL pre-weaning growth rate QTL 8
Tssr5333 18 57911998 to 57912018 20 + TSS region transcription start site region 5333
2210411G17Rik 18 57949906 to 57952095 2189 unclassified gene RIKEN cDNA 2210411G17 gene
2210409O19Rik 18 57954242 to 57955291 1049 unclassified gene RIKEN cDNA 2210409O19 gene
D18Mit181 18 57994795 to 57994941 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 181
Fbn2 18 58008623 to 58209926 201303 - protein coding gene fibrillin 2
Tssr5334 18 58009104 to 58009108 4 - TSS region transcription start site region 5334
Tssr153415 18 58009135 to 58009144 9 - TSS region transcription start site region 153415
Tssr153416 18 58072810 to 58072824 14 - TSS region transcription start site region 153416
Tssr153417 18 58072844 to 58072852 8 - TSS region transcription start site region 153417
Tssr153418 18 58072868 to 58072875 7 - TSS region transcription start site region 153418
5930427J20Rik 18 58091069 to 58092484 1415 unclassified gene RIKEN cDNA 5930427J20 gene
Tssr153419 18 58097058 to 58097061 3 - TSS region transcription start site region 153419
Tssr151209 18 58146367 to 58146368 1 + TSS region transcription start site region 151209
Tssr153420 18 58168355 to 58168360 5 - TSS region transcription start site region 153420
D330023I04Rik 18 58204138 to 58207794 3656 unclassified gene RIKEN cDNA D330023I04 gene
Cpgi10081 18 58209046 to 58211276 2230 CpG island CpG island 10081
Tssr153421 18 58209133 to 58209148 15 - TSS region transcription start site region 153421
Tssr5335 18 58209959 to 58209982 23 - TSS region transcription start site region 5335
Tssr153422 18 58210056 to 58210067 11 - TSS region transcription start site region 153422
Tssr5336 18 58210092 to 58210109 17 - TSS region transcription start site region 5336
Tssr5337 18 58210267 to 58210269 2 - TSS region transcription start site region 5337
Gm41741 18 58210295 to 58215455 5160 + lncRNA gene predicted gene, 41741
Tssr153423 18 58210408 to 58210419 11 - TSS region transcription start site region 153423
Tssr153424 18 58210439 to 58210457 18 - TSS region transcription start site region 153424
Tssr5338 18 58210522 to 58210569 47 - TSS region transcription start site region 5338
Tssr153425 18 58210570 to 58210573 3 - TSS region transcription start site region 153425
Tssr5339 18 58210585 to 58210594 9 - TSS region transcription start site region 5339
Tssr153426 18 58210731 to 58210744 13 - TSS region transcription start site region 153426
Tssr153427 18 58210763 to 58210771 8 - TSS region transcription start site region 153427
Gm26507 18 58215511 to 58222911 7400 + lincRNA gene predicted gene, 26507
Gm25660 18 58231472 to 58231575 103 - rRNA gene predicted gene, 25660
D18Mit52 18 58337615 to 58337755 140 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 52
Tssr151210 18 58408900 to 58408947 47 + TSS region transcription start site region 151210
Cpgi10082 18 58555693 to 58555992 299 CpG island CpG island 10082
Tssr151211 18 58555958 to 58556009 51 + TSS region transcription start site region 151211
Tssr151212 18 58556011 to 58556047 36 + TSS region transcription start site region 151212
Tssr151213 18 58556062 to 58556073 11 + TSS region transcription start site region 151213
Tssr151214 18 58556076 to 58556081 5 + TSS region transcription start site region 151214
Tssr151215 18 58556090 to 58556100 10 + TSS region transcription start site region 151215
Tssr151216 18 58556200 to 58556216 16 + TSS region transcription start site region 151216
Tssr151217 18 58556224 to 58556246 22 + TSS region transcription start site region 151217
Slc27a6 18 58556257 to 58612773 56516 + protein coding gene solute carrier family 27 (fatty acid transporter), member 6
Cpgi10083 18 58556666 to 58556897 231 CpG island CpG island 10083
Tssr151218 18 58572015 to 58572033 18 + TSS region transcription start site region 151218