Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:5171960-7281971

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065
Gm34630 18 5389802 to 5402870 13068 - lncRNA gene predicted gene, 34630
Tssr152328 18 5404430 to 5404437 7 - TSS region transcription start site region 152328
Tssr152329 18 5404498 to 5404502 4 - TSS region transcription start site region 152329
Tssr152330 18 5404575 to 5404589 14 - TSS region transcription start site region 152330
Gm10125 18 5491501 to 5592437 100936 - lncRNA gene predicted gene 10125
Gm26575 18 5572824 to 5575055 2231 - sense intronic lncRNA gene predicted gene, 26575
Gm2238 18 5588043 to 5591711 3668 - unclassified gene predicted gene 2238
Cpgi9673 18 5591170 to 5593432 2262 CpG island CpG island 9673
Tssr149944 18 5591391 to 5591408 17 + TSS region transcription start site region 149944
Tssr149945 18 5591426 to 5591446 20 + TSS region transcription start site region 149945
Zeb1 18 5591860 to 5775467 183607 + protein coding gene zinc finger E-box binding homeobox 1
Tssr149946 18 5591868 to 5591902 34 + TSS region transcription start site region 149946
Tssr149947 18 5591910 to 5591919 9 + TSS region transcription start site region 149947
Tssr152331 18 5592431 to 5592469 38 - TSS region transcription start site region 152331
Tssr149948 18 5593347 to 5593351 4 + TSS region transcription start site region 149948
Tssr152332 18 5593377 to 5593388 11 - TSS region transcription start site region 152332
Tssr152333 18 5593429 to 5593455 26 - TSS region transcription start site region 152333
Tssr149949 18 5593566 to 5593586 20 + TSS region transcription start site region 149949
Tssr152334 18 5593795 to 5593814 19 - TSS region transcription start site region 152334
Tssr149950 18 5593882 to 5593900 18 + TSS region transcription start site region 149950
Tssr152335 18 5593909 to 5593917 8 - TSS region transcription start site region 152335
Tssr152336 18 5593927 to 5593942 15 - TSS region transcription start site region 152336
Tssr149951 18 5594199 to 5594230 31 + TSS region transcription start site region 149951
Tssr149952 18 5603739 to 5603761 22 + TSS region transcription start site region 149952
Tssr149953 18 5603762 to 5603776 14 + TSS region transcription start site region 149953
Gm16147 18 5611558 to 5611930 372 - pseudogene predicted gene 16147
Gm22709 18 5614473 to 5614583 110 + miRNA gene predicted gene, 22709
Tssr149954 18 5625968 to 5625972 4 + TSS region transcription start site region 149954
Tssr149955 18 5669262 to 5669269 7 + TSS region transcription start site region 149955
Tssr5239 18 5671156 to 5671159 3 + TSS region transcription start site region 5239
Tssr149956 18 5688820 to 5688823 3 + TSS region transcription start site region 149956
Tssr5240 18 5721377 to 5721384 7 + TSS region transcription start site region 5240
Tssr149957 18 5772694 to 5772707 13 + TSS region transcription start site region 149957
Cpgi9674 18 5819722 to 5820132 410 CpG island CpG island 9674
Gm34740 18 5885791 to 5889876 4085 - lncRNA gene predicted gene, 34740
Gm34804 18 5956746 to 5966908 10162 + lncRNA gene predicted gene, 34804
D18Mit219 18 5976166 to 5976329 163 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 219
Cpgi9675 18 5989558 to 5990320 762 CpG island CpG island 9675
Gm41663 18 6004578 to 6015278 10700 + lncRNA gene predicted gene, 41663
Gm41662 18 6014254 to 6015021 767 - lncRNA gene predicted gene, 41662
Arhgap12 18 6024448 to 6136098 111650 - protein coding gene Rho GTPase activating protein 12
Gm19240 18 6029179 to 6030456 1277 - pseudogene predicted gene, 19240
Tssr152337 18 6039401 to 6039413 12 - TSS region transcription start site region 152337
Gm18278 18 6095387 to 6096116 729 pseudogene predicted gene, 18278
Tssr149958 18 6101642 to 6101644 2 + TSS region transcription start site region 149958
Rafaril 18 6108404 to 6108555 151 QTL Rafar interacting locus
D18Mit64 18 6108404 to 6108555 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 64
Tssr152338 18 6135227 to 6135230 3 - TSS region transcription start site region 152338
Cpgi9676 18 6135286 to 6136815 1529 CpG island CpG island 9676
Tssr152339 18 6135859 to 6135870 11 - TSS region transcription start site region 152339
Tssr152340 18 6135896 to 6135999 103 - TSS region transcription start site region 152340
Tssr152341 18 6136057 to 6136068 11 - TSS region transcription start site region 152341
Tssr149959 18 6136420 to 6136427 7 + TSS region transcription start site region 149959
Kif5b 18 6201005 to 6241524 40519 - protein coding gene kinesin family member 5B
Gm17036 18 6213913 to 6227324 13411 + antisense lncRNA gene predicted gene 17036
Tssr152342 18 6214604 to 6214617 13 - TSS region transcription start site region 152342
Tssr152343 18 6216899 to 6216931 32 - TSS region transcription start site region 152343
Tssr152344 18 6220869 to 6220881 12 - TSS region transcription start site region 152344
Tssr152345 18 6220924 to 6220933 9 - TSS region transcription start site region 152345
Tssr152346 18 6220985 to 6220999 14 - TSS region transcription start site region 152346
Tssr152347 18 6222827 to 6222866 39 - TSS region transcription start site region 152347
Tssr152348 18 6223687 to 6223698 11 - TSS region transcription start site region 152348
Tssr152349 18 6224045 to 6224065 20 - TSS region transcription start site region 152349
Tssr152350 18 6224070 to 6224083 13 - TSS region transcription start site region 152350
Tssr152351 18 6225344 to 6225362 18 - TSS region transcription start site region 152351
Tssr152352 18 6226960 to 6226971 11 - TSS region transcription start site region 152352
Cpgi9677 18 6240682 to 6241714 1032 CpG island CpG island 9677
Gm41664 18 6240814 to 6268387 27573 + lncRNA gene predicted gene, 41664
Tssr152353 18 6241164 to 6241214 50 - TSS region transcription start site region 152353
Tssr152354 18 6241238 to 6241307 69 - TSS region transcription start site region 152354
Tssr152355 18 6241471 to 6241482 11 - TSS region transcription start site region 152355
Tssr152356 18 6241486 to 6241550 64 - TSS region transcription start site region 152356
Tssr149960 18 6332587 to 6332609 22 + TSS region transcription start site region 149960
Rpl27-ps3 18 6332632 to 6333042 410 + pseudogene ribosomal protein L27, pseudogene 3
Gm49986 18 6368360 to 6368797 437 + pseudogene predicted gene, 49986
Gm6291 18 6371352 to 6371660 308 - pseudogene predicted gene 6291
Epc1 18 6435951 to 6516108 80157 - protein coding gene enhancer of polycomb homolog 1
Cpgi9678 18 6489849 to 6491322 1473 CpG island CpG island 9678
Tssr149961 18 6490134 to 6490165 31 + TSS region transcription start site region 149961
Gm28529 18 6490143 to 6496962 6819 + antisense lncRNA gene predicted gene 28529
Mir1893 18 6490564 to 6490646 82 - miRNA gene microRNA 1893
Tssr152357 18 6490702 to 6490738 36 - TSS region transcription start site region 152357
Tssr152358 18 6490778 to 6490793 15 - TSS region transcription start site region 152358
Tssr152359 18 6490808 to 6490869 61 - TSS region transcription start site region 152359
Tssr152360 18 6490877 to 6490898 21 - TSS region transcription start site region 152360
Tssr152361 18 6490901 to 6490926 25 - TSS region transcription start site region 152361
Tssr152362 18 6510715 to 6510722 7 - TSS region transcription start site region 152362
Tssr152363 18 6515134 to 6515140 6 - TSS region transcription start site region 152363
Cpgi9679 18 6515978 to 6516607 629 CpG island CpG island 9679
Tssr152364 18 6516067 to 6516083 16 - TSS region transcription start site region 152364
Tssr152365 18 6516089 to 6516106 17 - TSS region transcription start site region 152365
Tssr149962 18 6516231 to 6516252 21 + TSS region transcription start site region 149962
Tssr149963 18 6516668 to 6516672 4 + TSS region transcription start site region 149963
Gm7464 18 6557130 to 6557796 666 + pseudogene predicted gene 7464
Tssr149964 18 6557152 to 6557158 6 + TSS region transcription start site region 149964
Tssr152366 18 6595474 to 6595479 5 - TSS region transcription start site region 152366
D18Mit220 18 6602571 to 6602646 75 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 220
Tssr149965 18 6603627 to 6603633 6 + TSS region transcription start site region 149965
4921524L21Rik 18 6603629 to 6638970 35341 + protein coding gene RIKEN cDNA 4921524L21 gene
Gm50077 18 6687843 to 6691317 3474 - pseudogene predicted gene, 50077
Tssr149966 18 6733733 to 6733749 16 + TSS region transcription start site region 149966
Tssr149967 18 6733779 to 6733788 9 + TSS region transcription start site region 149967
Tssr149968 18 6733893 to 6733898 5 + TSS region transcription start site region 149968
Tssr149969 18 6733953 to 6733960 7 + TSS region transcription start site region 149969
Gm7466 18 6760516 to 6760959 443 - pseudogene predicted gene 7466
Cpgi9680 18 6764811 to 6765629 818 CpG island CpG island 9680
Tssr149970 18 6765035 to 6765050 15 + TSS region transcription start site region 149970
Tssr149971 18 6765086 to 6765098 12 + TSS region transcription start site region 149971
Tssr149972 18 6765117 to 6765123 6 + TSS region transcription start site region 149972
Rab18 18 6765167 to 6791606 26439 + protein coding gene RAB18, member RAS oncogene family
Tssr149973 18 6765171 to 6765220 49 + TSS region transcription start site region 149973
Tssr149974 18 6765226 to 6765254 28 + TSS region transcription start site region 149974
Tssr149975 18 6765282 to 6765297 15 + TSS region transcription start site region 149975
Gm50081 18 6788768 to 6792137 3369 + sense overlapping lncRNA gene predicted gene, 50081
Tssr149976 18 6788906 to 6788911 5 + TSS region transcription start site region 149976
Gm2350 18 6910459 to 6936621 26162 - unclassified gene predicted gene 2350
Mkx 18 6934966 to 7004779 69813 - protein coding gene mohawk homeobox
Tssr152367 18 6983603 to 6983607 4 - TSS region transcription start site region 152367
Cpgi9681 18 7000569 to 7000748 179 CpG island CpG island 9681
Cpgi9682 18 7001452 to 7002715 1263 CpG island CpG island 9682
Cpgi9683 18 7003380 to 7005403 2023 CpG island CpG island 9683
Tssr152368 18 7004717 to 7004733 16 - TSS region transcription start site region 152368
Gm46633 18 7004963 to 7006405 1442 + lncRNA gene predicted gene, 46633
Gm10350 18 7043909 to 7044135 226 - pseudogene predicted gene 10350
Armc4 18 7088209 to 7297936 209727 - protein coding gene armadillo repeat containing 4
Gm18581 18 7107181 to 7108183 1002 - pseudogene predicted gene, 18581
D18Mit18 18 7116121 to 7116255 134 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 18
4930415O11Rik 18 7150343 to 7151776 1433 unclassified gene RIKEN cDNA 4930415O11 gene
Tssr152369 18 7273578 to 7273587 9 - TSS region transcription start site region 152369
Idd21.3 18 21513420 to 6108404 -15405016 QTL insulin dependent diabetes susceptibility 21.3