Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:47291403-49881406

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema6a 18 47245254 to 47369213 123959 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
Tssr153280 18 47306462 to 47306482 20 - TSS region transcription start site region 153280
Tssr153281 18 47321613 to 47321618 5 - TSS region transcription start site region 153281
Tssr150974 18 47331460 to 47331469 9 + TSS region transcription start site region 150974
Tssr153282 18 47333291 to 47333306 15 - TSS region transcription start site region 153282
Tssr153283 18 47333311 to 47333373 62 - TSS region transcription start site region 153283
D18Mit179 18 47366148 to 47366232 84 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 179
Cpgi10033 18 47366318 to 47369257 2939 CpG island CpG island 10033
Tssr153284 18 47368481 to 47368486 5 - TSS region transcription start site region 153284
Tssr153285 18 47368690 to 47368707 17 - TSS region transcription start site region 153285
Tssr153286 18 47368858 to 47368878 20 - TSS region transcription start site region 153286
Tssr153287 18 47368880 to 47368896 16 - TSS region transcription start site region 153287
Tssr153288 18 47368908 to 47368933 25 - TSS region transcription start site region 153288
Tssr5310 18 47368963 to 47368970 7 - TSS region transcription start site region 5310
Tssr153289 18 47369068 to 47369089 21 - TSS region transcription start site region 153289
Tssr153290 18 47369130 to 47369149 19 - TSS region transcription start site region 153290
Cpgi10034 18 47369769 to 47370091 322 CpG island CpG island 10034
Cpgi10035 18 47370349 to 47370721 372 CpG island CpG island 10035
Gm6883 18 47414465 to 47415361 896 - pseudogene predicted gene 6883
Tssr153291 18 47415380 to 47415388 8 - TSS region transcription start site region 153291
Gm50086 18 47433781 to 47437778 3997 - lincRNA gene predicted gene, 50086
9130209A04Rik 18 47452668 to 47470868 18200 + lncRNA gene RIKEN cDNA 9130209A04 gene
Gm5095 18 47537735 to 47718636 180901 + lncRNA gene predicted gene 5095
Gm32660 18 47604663 to 47635735 31072 + lncRNA gene predicted gene, 32660
Gm5236 18 47729720 to 47730352 632 + pseudogene predicted gene 5236
Gm41720 18 47733114 to 47744921 11807 + lncRNA gene predicted gene, 41720
Gm4146 18 47761088 to 47761874 786 - unclassified gene predicted gene 4146
Tssr5311 18 47901683 to 47901700 17 + TSS region transcription start site region 5311
G630055G22Rik 18 47922841 to 48107980 185139 + lncRNA gene RIKEN cDNA G630055G22 gene
Tssr150975 18 48045329 to 48045348 19 + TSS region transcription start site region 150975
Eno1b 18 48045335 to 48048378 3043 + protein coding gene enolase 1B, retrotransposed
Tssr150976 18 48045354 to 48045355 1 + TSS region transcription start site region 150976
Tssr150977 18 48046645 to 48046646 1 + TSS region transcription start site region 150977
Gm5237 18 48068322 to 48070052 1730 - pseudogene predicted gene 5237
D18Mit73 18 48186960 to 48187223 263 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 73
Gm41721 18 48240554 to 48306230 65676 + lncRNA gene predicted gene, 41721
Tssr153292 18 48444416 to 48444418 2 - TSS region transcription start site region 153292
Tssr5312 18 48586403 to 48586406 3 + TSS region transcription start site region 5312
Gm5839 18 48626704 to 48627710 1006 + pseudogene predicted gene 5839
D18Mit57 18 48855413 to 48855562 149 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 57
Scc5 18 48855413 to 48855562 149 QTL colon tumor susceptibility 5
Gm18993 18 49064067 to 49064761 694 + pseudogene predicted gene, 18993
Gm32870 18 49247777 to 49336844 89067 - lncRNA gene predicted gene, 32870
Tssr5313 18 49402438 to 49402439 1 - TSS region transcription start site region 5313
Tssr150978 18 49478948 to 49478952 4 + TSS region transcription start site region 150978
Gm18837 18 49506402 to 49507250 848 + pseudogene predicted gene, 18837
Tssr150979 18 49523286 to 49523293 7 + TSS region transcription start site region 150979
1700044K03Rik 18 49523289 to 49524440 1151 + lincRNA gene RIKEN cDNA 1700044K03 gene
Gm32958 18 49547819 to 49559491 11672 - lncRNA gene predicted gene, 32958
Gm25440 18 49581696 to 49581849 153 - snRNA gene predicted gene, 25440
Dtwd2 18 49696145 to 49755601 59456 - protein coding gene DTW domain containing 2
Tssr5314 18 49706793 to 49706796 3 + TSS region transcription start site region 5314
D18Mit137 18 49716167 to 49716292 125 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 137
Cpgi10036 18 49755213 to 49756046 833 CpG island CpG island 10036
Tssr153293 18 49755548 to 49755591 43 - TSS region transcription start site region 153293
Tssr150980 18 49755733 to 49755751 18 + TSS region transcription start site region 150980
Tssr150981 18 49755766 to 49755785 19 + TSS region transcription start site region 150981
Gm16283 18 49755794 to 49757189 1395 + lncRNA gene predicted gene 16283
Tssr153294 18 49772575 to 49772585 10 - TSS region transcription start site region 153294
Tssr150982 18 49772792 to 49772825 33 + TSS region transcription start site region 150982
1700065O20Rik 18 49803332 to 49817956 14624 - lincRNA gene RIKEN cDNA 1700065O20 gene
Cpgi10037 18 49832397 to 49833377 980 CpG island CpG island 10037
Tssr150983 18 49832592 to 49832605 13 + TSS region transcription start site region 150983
Tssr150984 18 49832622 to 49832686 64 + TSS region transcription start site region 150984
Dmxl1 18 49832670 to 49965473 132803 + protein coding gene Dmx-like 1
Tssr150985 18 49832690 to 49832699 9 + TSS region transcription start site region 150985
Tssr150986 18 49835887 to 49835915 28 + TSS region transcription start site region 150986
Tssr150987 18 49840742 to 49840747 5 + TSS region transcription start site region 150987
Tssr150988 18 49880733 to 49880746 13 + TSS region transcription start site region 150988