Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:4539635-5380299

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm41658 18 4541612 to 4562599 20987 - lncRNA gene predicted gene, 41658
Tssr149912 18 4563123 to 4563130 7 + TSS region transcription start site region 149912
Tssr149913 18 4590731 to 4590759 28 + TSS region transcription start site region 149913
Gm50024 18 4590763 to 4616064 25301 + lincRNA gene predicted gene, 50024
Cpgi9668 18 4634414 to 4635768 1354 CpG island CpG island 9668
Jcad 18 4634878 to 4682869 47991 + protein coding gene junctional cadherin 5 associated
Tssr149914 18 4634912 to 4634974 62 + TSS region transcription start site region 149914
Tssr149915 18 4634977 to 4634990 13 + TSS region transcription start site region 149915
Tssr149916 18 4636532 to 4636553 21 + TSS region transcription start site region 149916
Tssr149917 18 4743053 to 4743061 8 + TSS region transcription start site region 149917
Gm5047 18 4743076 to 4743876 800 + pseudogene predicted gene 5047
Gm10556 18 4812486 to 4850959 38473 + lincRNA gene predicted gene 10556
Gm34269 18 4820303 to 4826659 6356 - lncRNA gene predicted gene, 34269
Gm41659 18 4869777 to 4912263 42486 + lncRNA gene predicted gene, 41659
Tssr149918 18 4908906 to 4908940 34 + TSS region transcription start site region 149918
Tssr149919 18 4908944 to 4908963 19 + TSS region transcription start site region 149919
Tssr149920 18 4908965 to 4908974 9 + TSS region transcription start site region 149920
Tssr5237 18 4909199 to 4909207 8 + TSS region transcription start site region 5237
D18Mit165 18 4919199 to 4919513 314 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 165
Cpgi9669 18 4920095 to 4922371 2276 CpG island CpG island 9669
Tssr149921 18 4920509 to 4920586 77 + TSS region transcription start site region 149921
Svil 18 4920540 to 5119299 198759 + protein coding gene supervillin
Tssr149922 18 4920623 to 4920642 19 + TSS region transcription start site region 149922
Tssr149923 18 4920690 to 4920706 16 + TSS region transcription start site region 149923
Tssr149924 18 4920721 to 4920733 12 + TSS region transcription start site region 149924
Tssr149925 18 4921542 to 4921570 28 + TSS region transcription start site region 149925
Tssr149926 18 4921662 to 4921690 28 + TSS region transcription start site region 149926
Tssr149927 18 4928783 to 4928800 17 + TSS region transcription start site region 149927
BC025933 18 4959635 to 4960299 664 protein coding gene cDNA sequence BC025933
Tssr149928 18 4980587 to 4980598 11 + TSS region transcription start site region 149928
Tssr149929 18 4980600 to 4980627 27 + TSS region transcription start site region 149929
Tssr149930 18 4993777 to 4993789 12 + TSS region transcription start site region 149930
Tssr149931 18 4993795 to 4993819 24 + TSS region transcription start site region 149931
Tssr149932 18 4993837 to 4993854 17 + TSS region transcription start site region 149932
Tssr149933 18 4993870 to 4993880 10 + TSS region transcription start site region 149933
Tssr149934 18 4994600 to 4994623 23 + TSS region transcription start site region 149934
Tssr149935 18 4994640 to 4994669 29 + TSS region transcription start site region 149935
Tssr149936 18 4994670 to 4994706 36 + TSS region transcription start site region 149936
Tssr149937 18 4994710 to 4994717 7 + TSS region transcription start site region 149937
Tssr149938 18 4994890 to 4994901 11 + TSS region transcription start site region 149938
Tssr149939 18 4994903 to 4994943 40 + TSS region transcription start site region 149939
Tssr149940 18 4994972 to 4994983 11 + TSS region transcription start site region 149940
Tssr149941 18 4995009 to 4995014 5 + TSS region transcription start site region 149941
Tssr149942 18 5035071 to 5035114 43 + TSS region transcription start site region 149942
D18Mit19 18 5041119 to 5041269 150 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 19
W3q15 18 5041119 to 61139571 56098452 QTL weight 3 weeks QTL 15
Gm34326 18 5042818 to 5048867 6049 - lncRNA gene predicted gene, 34326
Tssr149943 18 5125610 to 5125615 5 + TSS region transcription start site region 149943
Gm34541 18 5139349 to 5142068 2719 + lncRNA gene predicted gene, 34541
Gm26682 18 5141762 to 5142801 1039 - lincRNA gene predicted gene, 26682
Cpgi9670 18 5162226 to 5162716 490 CpG island CpG island 9670
Cpgi9671 18 5162989 to 5163731 742 CpG island CpG island 9671
Zfp438 18 5210029 to 5334807 124778 - protein coding gene zinc finger protein 438
Tssr152321 18 5273257 to 5273276 19 - TSS region transcription start site region 152321
Tssr152322 18 5273278 to 5273299 21 - TSS region transcription start site region 152322
Tssr5238 18 5273312 to 5273318 6 - TSS region transcription start site region 5238
Tssr152323 18 5273321 to 5273325 4 - TSS region transcription start site region 152323
Cpgi9672 18 5333852 to 5334977 1125 CpG island CpG island 9672
Tssr152324 18 5334309 to 5334331 22 - TSS region transcription start site region 152324
Tssr152325 18 5334364 to 5334410 46 - TSS region transcription start site region 152325
Tssr152326 18 5334739 to 5334751 12 - TSS region transcription start site region 152326
Tssr152327 18 5334767 to 5334835 68 - TSS region transcription start site region 152327
D18Mit109 18 5336017 to 5336186 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 109
Gm50064 18 5348258 to 5361861 13603 - lincRNA gene predicted gene, 50064
Gm50065 18 5368541 to 5370482 1941 - lincRNA gene predicted gene, 50065