Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:44363876-46173916

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr27 18 36054514 to 44976451 8921937 QTL leishmaniasis resistance 27
Cpgi10009 18 44380108 to 44381204 1096 CpG island CpG island 10009
Tssr153191 18 44380323 to 44380336 13 - TSS region transcription start site region 153191
Tssr150914 18 44380479 to 44380554 75 + TSS region transcription start site region 150914
Dcp2 18 44380502 to 44424969 44467 + protein coding gene decapping mRNA 2
Tssr150915 18 44380559 to 44380577 18 + TSS region transcription start site region 150915
Tssr150916 18 44380767 to 44380810 43 + TSS region transcription start site region 150916
Tssr150917 18 44380812 to 44380825 13 + TSS region transcription start site region 150917
Tssr150918 18 44381351 to 44381366 15 + TSS region transcription start site region 150918
Tssr150919 18 44411238 to 44411250 12 + TSS region transcription start site region 150919
Tssr150920 18 44423529 to 44423561 32 + TSS region transcription start site region 150920
Mcc 18 44425060 to 44812182 387122 - protein coding gene mutated in colorectal cancers
Tssr153192 18 44429518 to 44429522 4 - TSS region transcription start site region 153192
Tssr150921 18 44539466 to 44539469 3 + TSS region transcription start site region 150921
Tssr153193 18 44555870 to 44555920 50 - TSS region transcription start site region 153193
Tssr153194 18 44555922 to 44555937 15 - TSS region transcription start site region 153194
Tssr150922 18 44556802 to 44556807 5 + TSS region transcription start site region 150922
Tssr150923 18 44571154 to 44571156 2 + TSS region transcription start site region 150923
Tssr153195 18 44574658 to 44574670 12 - TSS region transcription start site region 153195
Tssr153196 18 44601720 to 44601737 17 - TSS region transcription start site region 153196
Tssr153197 18 44633754 to 44633758 4 - TSS region transcription start site region 153197
Tssr150924 18 44634148 to 44634181 33 + TSS region transcription start site region 150924
Tssr153198 18 44641414 to 44641417 3 - TSS region transcription start site region 153198
D18Mit235 18 44651007 to 44651125 118 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 235
Tssr153199 18 44652165 to 44652169 4 - TSS region transcription start site region 153199
D18Mit237 18 44654073 to 44654159 86 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 237
Cpgi10010 18 44661515 to 44662589 1074 CpG island CpG island 10010
A930012L18Rik 18 44661665 to 44676271 14606 + antisense lncRNA gene RIKEN cDNA A930012L18 gene
Tssr150925 18 44662113 to 44662124 11 + TSS region transcription start site region 150925
Tssr153200 18 44662214 to 44662244 30 - TSS region transcription start site region 153200
Tssr153201 18 44662251 to 44662264 13 - TSS region transcription start site region 153201
Tssr153202 18 44662268 to 44662306 38 - TSS region transcription start site region 153202
Tssr153203 18 44662318 to 44662338 20 - TSS region transcription start site region 153203
Tssr150926 18 44811656 to 44811693 37 + TSS region transcription start site region 150926
Cpgi10011 18 44811826 to 44812509 683 CpG island CpG island 10011
Gm43425 18 44821769 to 44825059 3290 + lincRNA gene predicted gene 43425
Ythdc2 18 44827746 to 44889724 61978 + protein coding gene YTH domain containing 2
Cpgi10012 18 44828179 to 44829148 969 CpG island CpG island 10012
Tssr150927 18 44828452 to 44828470 18 + TSS region transcription start site region 150927
Tssr150928 18 44828471 to 44828536 65 + TSS region transcription start site region 150928
Tssr153204 18 44828883 to 44828894 11 - TSS region transcription start site region 153204
Tssr153205 18 44828897 to 44828933 36 - TSS region transcription start site region 153205
4833422B07Rik 18 44883072 to 44884428 1356 unclassified gene RIKEN cDNA 4833422B07 gene
D18Mit35 18 44976313 to 44976451 138 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 35
Lmr13 18 44976313 to 44976451 138 QTL leishmaniasis resistance 13
Thcr 18 44997537 to 68645706 23648169 QTL T helper cell response
D18Mit149 18 44997537 to 44997672 135 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 149
Mhysq5 18 44997537 to 44997672 135 QTL male hybrid sterility QTL 5
Gm31706 18 45044811 to 45141138 96327 + lncRNA gene predicted gene, 31706
Gm6663 18 45069664 to 45071371 1707 - pseudogene predicted gene 6663
Gm26928 18 45089326 to 45090314 988 - pseudogene predicted gene, 26928
Cpgi10013 18 45146468 to 45147168 700 CpG island CpG island 10013
Gm4839 18 45146511 to 45147126 615 - pseudogene predicted gene 4839
D18Mit180 18 45261817 to 45261926 109 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 180
Cpgi10014 18 45268283 to 45269166 883 CpG island CpG island 10014
Tssr150929 18 45268853 to 45268864 11 + TSS region transcription start site region 150929
Kcnn2 18 45268860 to 45685887 417027 + protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
Tssr150930 18 45268876 to 45268916 40 + TSS region transcription start site region 150930
Tssr5306 18 45268951 to 45268965 14 + TSS region transcription start site region 5306
Gm10540 18 45285833 to 45286108 275 - pseudogene predicted gene 10540
Gm18652 18 45418624 to 45419153 529 - pseudogene predicted gene, 18652
Gm31907 18 45430264 to 45510292 80028 - lncRNA gene predicted gene, 31907
Gm32139 18 45558058 to 45559285 1227 - lncRNA gene predicted gene, 32139
Cpgi10015 18 45558092 to 45561119 3027 CpG island CpG island 10015
Tssr5307 18 45559013 to 45559022 9 + TSS region transcription start site region 5307
Tssr153206 18 45559325 to 45559339 14 - TSS region transcription start site region 153206
Tssr150931 18 45559407 to 45559418 11 + TSS region transcription start site region 150931
Tssr150932 18 45559430 to 45559482 52 + TSS region transcription start site region 150932
Tssr150933 18 45559488 to 45559503 15 + TSS region transcription start site region 150933
Tssr150934 18 45559534 to 45559548 14 + TSS region transcription start site region 150934
Tssr150935 18 45559560 to 45559569 9 + TSS region transcription start site region 150935
Tssr150936 18 45559589 to 45559600 11 + TSS region transcription start site region 150936
Tssr150937 18 45559806 to 45559816 10 + TSS region transcription start site region 150937
Tssr150938 18 45559818 to 45559881 63 + TSS region transcription start site region 150938
Tssr150939 18 45559888 to 45559905 17 + TSS region transcription start site region 150939
Tssr150940 18 45559929 to 45559943 14 + TSS region transcription start site region 150940
Tssr150941 18 45593344 to 45593345 1 + TSS region transcription start site region 150941
Gm46623 18 45655355 to 45676947 21592 - lncRNA gene predicted gene, 46623
A330093E20Rik 18 45683487 to 45896509 213022 - antisense lncRNA gene RIKEN cDNA A330093E20 gene
Gm41718 18 45718472 to 45735438 16966 + lncRNA gene predicted gene, 41718
Tssr153207 18 45895586 to 45895590 4 - TSS region transcription start site region 153207
Tssr153208 18 45934312 to 45934317 5 - TSS region transcription start site region 153208
Gm26262 18 45941007 to 45941133 126 + snoRNA gene predicted gene, 26262
Tssr5308 18 46074939 to 46074942 3 + TSS region transcription start site region 5308
Gm38337 18 46112661 to 46113259 598 - unclassified gene predicted gene, 38337
Tssr153209 18 46141574 to 46141599 25 - TSS region transcription start site region 153209
Tssr153210 18 46141641 to 46141648 7 - TSS region transcription start site region 153210
Tssr153211 18 46161743 to 46161752 9 - TSS region transcription start site region 153211
Trim36 18 46165302 to 46212607 47305 - protein coding gene tripartite motif-containing 36