Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:4316612-4787599

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr149903 18 4322668 to 4322671 3 + TSS region transcription start site region 149903
Map3k8 18 4331327 to 4353015 21688 - protein coding gene mitogen-activated protein kinase kinase kinase 8
Tssr152313 18 4336289 to 4336298 9 - TSS region transcription start site region 152313
Cpgi9666 18 4352815 to 4353669 854 CpG island CpG island 9666
Tssr152314 18 4352916 to 4352923 7 - TSS region transcription start site region 152314
Tssr152315 18 4352944 to 4352962 18 - TSS region transcription start site region 152315
Tssr149904 18 4353061 to 4353072 11 + TSS region transcription start site region 149904
Tssr152316 18 4353226 to 4353238 12 - TSS region transcription start site region 152316
Tssr152317 18 4353245 to 4353256 11 - TSS region transcription start site region 152317
Tssr152318 18 4353282 to 4353330 48 - TSS region transcription start site region 152318
Tssr152319 18 4353335 to 4353352 17 - TSS region transcription start site region 152319
Tssr152320 18 4353412 to 4353431 19 - TSS region transcription start site region 152320
Tssr149905 18 4353537 to 4353554 17 + TSS region transcription start site region 149905
4833419F23Rik 18 4353558 to 4368920 15362 + lncRNA gene RIKEN cDNA 4833419F23 gene
Tssr149906 18 4353581 to 4353592 11 + TSS region transcription start site region 149906
Tssr149907 18 4353608 to 4353631 23 + TSS region transcription start site region 149907
Gm50096 18 4353644 to 4380723 27079 + unclassified gene predicted gene, 50096
Tssr149908 18 4366923 to 4366934 11 + TSS region transcription start site region 149908
Gm26865 18 4373669 to 4379985 6316 - lincRNA gene predicted gene, 26865
Cpgi9667 18 4375471 to 4376173 702 CpG island CpG island 9667
Tssr149909 18 4375583 to 4375623 40 + TSS region transcription start site region 149909
Mtpap 18 4375592 to 4397330 21738 + protein coding gene mitochondrial poly(A) polymerase
Tssr149910 18 4396775 to 4396781 6 + TSS region transcription start site region 149910
Gm50023 18 4399328 to 4400910 1582 + lincRNA gene predicted gene, 50023
Gm7411 18 4484506 to 4485501 995 + pseudogene predicted gene 7411
Tssr149911 18 4484717 to 4484727 10 + TSS region transcription start site region 149911
Gm41658 18 4541612 to 4562599 20987 - lncRNA gene predicted gene, 41658
Tssr149912 18 4563123 to 4563130 7 + TSS region transcription start site region 149912
Tssr149913 18 4590731 to 4590759 28 + TSS region transcription start site region 149913
Gm50024 18 4590763 to 4616064 25301 + lincRNA gene predicted gene, 50024
Cpgi9668 18 4634414 to 4635768 1354 CpG island CpG island 9668
Jcad 18 4634878 to 4682869 47991 + protein coding gene junctional cadherin 5 associated
Tssr149914 18 4634912 to 4634974 62 + TSS region transcription start site region 149914
Tssr149915 18 4634977 to 4634990 13 + TSS region transcription start site region 149915
Tssr149916 18 4636532 to 4636553 21 + TSS region transcription start site region 149916
Tssr149917 18 4743053 to 4743061 8 + TSS region transcription start site region 149917
Gm5047 18 4743076 to 4743876 800 + pseudogene predicted gene 5047