Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:42149470-43649539

Filter by:
150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3rf2 18 42053667 to 42158960 105293 + protein coding gene SH3 domain containing ring finger 2
Tssr5298 18 42173317 to 42173323 6 + TSS region transcription start site region 5298
Cstdc7 18 42173370 to 42173663 293 + pseudogene cystatin domain containing 7
Plac8l1 18 42178675 to 42196709 18034 - protein coding gene PLAC8-like 1
Gm18086 18 42186175 to 42187772 1597 - pseudogene predicted gene, 18086
Tssr153111 18 42196680 to 42196698 18 - TSS region transcription start site region 153111
Tssr153112 18 42196699 to 42196739 40 - TSS region transcription start site region 153112
Tssr5299 18 42196743 to 42196747 4 - TSS region transcription start site region 5299
Gm5504 18 42200659 to 42201592 933 + pseudogene predicted gene 5504
Lars 18 42202350 to 42262122 59772 - protein coding gene leucyl-tRNA synthetase
Cpgi9990 18 42202441 to 42203007 566 CpG island CpG island 9990
Tssr153113 18 42216926 to 42216945 19 - TSS region transcription start site region 153113
Tssr153114 18 42229863 to 42229872 9 - TSS region transcription start site region 153114
Tssr153115 18 42249465 to 42249468 3 - TSS region transcription start site region 153115
Rps19-ps4 18 42252398 to 42252835 437 + pseudogene ribosomal protein S19, pseudogene 4
Tssr153116 18 42253761 to 42253768 7 - TSS region transcription start site region 153116
Cpgi9991 18 42261726 to 42262501 775 CpG island CpG island 9991
Tssr153117 18 42261978 to 42262013 35 - TSS region transcription start site region 153117
Tssr153118 18 42262053 to 42262140 87 - TSS region transcription start site region 153118
Tssr153119 18 42262142 to 42262153 11 - TSS region transcription start site region 153119
Gm4013 18 42274380 to 42275197 817 - lncRNA gene predicted gene 4013
Cpgi9992 18 42274931 to 42276042 1111 CpG island CpG island 9992
Tssr153120 18 42275121 to 42275135 14 - TSS region transcription start site region 153120
Tssr153121 18 42275169 to 42275212 43 - TSS region transcription start site region 153121
Rbm27 18 42275353 to 42341542 66189 + protein coding gene RNA binding motif protein 27
Tssr150870 18 42275369 to 42275392 23 + TSS region transcription start site region 150870
Tssr150871 18 42275397 to 42275411 14 + TSS region transcription start site region 150871
Gm22697 18 42301890 to 42301952 62 + miRNA gene predicted gene, 22697
D18Mit72 18 42319341 to 42319492 151 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 72
Tssr150872 18 42319883 to 42319919 36 + TSS region transcription start site region 150872
Tssr150873 18 42325976 to 42325987 11 + TSS region transcription start site region 150873
Tssr150874 18 42338962 to 42338966 4 + TSS region transcription start site region 150874
Cpgi9993 18 42379485 to 42379735 250 CpG island CpG island 9993
Cpgi9994 18 42386060 to 42386443 383 CpG island CpG island 9994
Cpgi9995 18 42394254 to 42396125 1871 CpG island CpG island 9995
Tssr150875 18 42394367 to 42394370 3 + TSS region transcription start site region 150875
Tssr150876 18 42394472 to 42394481 9 + TSS region transcription start site region 150876
Tssr150877 18 42394562 to 42394575 13 + TSS region transcription start site region 150877
Pou4f3 18 42394597 to 42396093 1496 + protein coding gene POU domain, class 4, transcription factor 3
Tssr150878 18 42398382 to 42398386 4 + TSS region transcription start site region 150878
Gm31438 18 42398400 to 42433822 35422 + lncRNA gene predicted gene, 31438
Cpgi9996 18 42398655 to 42398899 244 CpG island CpG island 9996
Cpgi9997 18 42401199 to 42401711 512 CpG island CpG island 9997
Cpgi9998 18 42429333 to 42429558 225 CpG island CpG island 9998
Tssr150879 18 42440975 to 42440985 10 + TSS region transcription start site region 150879
Gm16415 18 42441019 to 42441507 488 + pseudogene predicted pseudogene 16415
Gm31501 18 42449285 to 42456575 7290 + lncRNA gene predicted gene, 31501
D18Mit37 18 42469413 to 42469582 169 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 37
Gm3631 18 42487080 to 42487655 575 + pseudogene predicted gene 3631
Cpgi9999 18 42510985 to 42512382 1397 CpG island CpG island 9999
Tssr150880 18 42511496 to 42511521 25 + TSS region transcription start site region 150880
Tcerg1 18 42511510 to 42575551 64041 + protein coding gene transcription elongation regulator 1 (CA150)
Tssr150881 18 42516218 to 42516223 5 + TSS region transcription start site region 150881
Tssr150882 18 42519080 to 42519087 7 + TSS region transcription start site region 150882
Tssr150883 18 42524219 to 42524243 24 + TSS region transcription start site region 150883
Tssr150884 18 42536258 to 42536270 12 + TSS region transcription start site region 150884
Tssr150885 18 42553405 to 42553415 10 + TSS region transcription start site region 150885
Gm27457 18 42574209 to 42574364 155 + unclassified non-coding RNA gene predicted gene, 27457
Gpr151 18 42578020 to 42579652 1632 - protein coding gene G protein-coupled receptor 151
Tssr153122 18 42579761 to 42579790 29 - TSS region transcription start site region 153122
Tssr153123 18 42579793 to 42579805 12 - TSS region transcription start site region 153123
C030004G16Rik 18 42615618 to 42622739 7121 - lncRNA gene RIKEN cDNA C030004G16 gene
Ppp2r2b 18 42645221 to 43059471 414250 - protein coding gene protein phosphatase 2, regulatory subunit B, beta
D18Mit23 18 42658002 to 42658145 143 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 23
Gm41713 18 42665658 to 42675016 9358 + lncRNA gene predicted gene, 41713
D18Ertd613e 18 42691326 to 42691550 224 DNA segment DNA segment, Chr 18, ERATO Doi 613, expressed
D18Mit148 18 42746954 to 42747153 199 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 148
Tssr153124 18 42862635 to 42862639 4 - TSS region transcription start site region 153124
Tssr153125 18 42867975 to 42867979 4 - TSS region transcription start site region 153125
Tssr153126 18 42877933 to 42877938 5 - TSS region transcription start site region 153126
Cpgi10000 18 42898525 to 42899693 1168 CpG island CpG island 10000
Tssr153127 18 42898936 to 42898975 39 - TSS region transcription start site region 153127
Tssr153128 18 42899006 to 42899044 38 - TSS region transcription start site region 153128
Tssr153129 18 42899306 to 42899317 11 - TSS region transcription start site region 153129
Tssr153130 18 42899326 to 42899337 11 - TSS region transcription start site region 153130
Tssr153131 18 42899452 to 42899463 11 - TSS region transcription start site region 153131
Tssr153132 18 42899470 to 42899539 69 - TSS region transcription start site region 153132
Smmq3 18 42923810 to 42923810 0 QTL soleus muscle mass QTL 3
4933407I08Rik 18 42935470 to 42938887 3417 + antisense lncRNA gene RIKEN cDNA 4933407I08 gene
Tssr153133 18 42938238 to 42938258 20 - TSS region transcription start site region 153133
Tssr5300 18 42952479 to 42952480 1 + TSS region transcription start site region 5300
4930572J10Rik 18 43038550 to 43171273 132723 lncRNA gene RIKEN cDNA 4930572J10 gene
Gm41712 18 43059417 to 43067590 8173 + lncRNA gene predicted gene, 41712
Tssr153134 18 43059418 to 43059466 48 - TSS region transcription start site region 153134
Tssr153135 18 43059527 to 43059538 11 - TSS region transcription start site region 153135
Tssr5301 18 43059564 to 43059569 5 - TSS region transcription start site region 5301
Tssr153136 18 43059617 to 43059642 25 - TSS region transcription start site region 153136
Gm22264 18 43070300 to 43070406 106 - snRNA gene predicted gene, 22264
Gm46622 18 43154736 to 43161986 7250 - lncRNA gene predicted gene, 46622
Gm8181 18 43171159 to 43171827 668 + pseudogene predicted gene 8181
Cpgi10001 18 43176235 to 43176471 236 CpG island CpG island 10001
Cpgi10002 18 43207444 to 43207906 462 CpG island CpG island 10002
Tssr150886 18 43207525 to 43207538 13 + TSS region transcription start site region 150886
Tssr150887 18 43207551 to 43207563 12 + TSS region transcription start site region 150887
Tssr150888 18 43207622 to 43207678 56 + TSS region transcription start site region 150888
Tssr150889 18 43207679 to 43207700 21 + TSS region transcription start site region 150889
Stk32a 18 43207697 to 43317481 109784 + protein coding gene serine/threonine kinase 32A
Tssr150890 18 43207710 to 43207721 11 + TSS region transcription start site region 150890
Tssr150891 18 43207724 to 43207737 13 + TSS region transcription start site region 150891
Gm31647 18 43246613 to 43250551 3938 - lncRNA gene predicted gene, 31647
Tssr150892 18 43265788 to 43265796 8 + TSS region transcription start site region 150892
Cpgi10003 18 43316688 to 43317154 466 CpG island CpG island 10003
Dpysl3 18 43320979 to 43438286 117307 - protein coding gene dihydropyrimidinase-like 3
Tssr153137 18 43321701 to 43321713 12 - TSS region transcription start site region 153137
Tssr153138 18 43322261 to 43322291 30 - TSS region transcription start site region 153138
Tssr153139 18 43322462 to 43322471 9 - TSS region transcription start site region 153139
Tssr153140 18 43322667 to 43322670 3 - TSS region transcription start site region 153140
Tssr153141 18 43323856 to 43323871 15 - TSS region transcription start site region 153141
Tssr153142 18 43324347 to 43324364 17 - TSS region transcription start site region 153142
Tssr153143 18 43325805 to 43325817 12 - TSS region transcription start site region 153143
Tssr153144 18 43328663 to 43328667 4 - TSS region transcription start site region 153144
Tssr153145 18 43345144 to 43345156 12 - TSS region transcription start site region 153145
Tssr153146 18 43354781 to 43354803 22 - TSS region transcription start site region 153146
C330024E10Rik 18 43359985 to 43360847 862 unclassified gene RIKEN cDNA C330024E10 gene
Tssr153147 18 43360995 to 43360999 4 - TSS region transcription start site region 153147
Tssr153148 18 43361063 to 43361072 9 - TSS region transcription start site region 153148
Tssr153149 18 43373193 to 43373204 11 - TSS region transcription start site region 153149
Tssr153150 18 43373217 to 43373245 28 - TSS region transcription start site region 153150
Tssr153151 18 43373248 to 43373267 19 - TSS region transcription start site region 153151
Tssr153152 18 43373292 to 43373293 1 - TSS region transcription start site region 153152
D18Mit202 18 43391935 to 43392045 110 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 202
Cpgi10004 18 43392496 to 43393779 1283 CpG island CpG island 10004
Tssr153153 18 43393051 to 43393137 86 - TSS region transcription start site region 153153
Tssr153154 18 43393138 to 43393150 12 - TSS region transcription start site region 153154
Tssr153155 18 43393151 to 43393170 19 - TSS region transcription start site region 153155
Tssr153156 18 43393186 to 43393218 32 - TSS region transcription start site region 153156
Tssr153157 18 43393261 to 43393275 14 - TSS region transcription start site region 153157
Tssr153158 18 43393278 to 43393298 20 - TSS region transcription start site region 153158
Tssr153159 18 43393346 to 43393381 35 - TSS region transcription start site region 153159
Gre1 18 43408013 to 46403932 2995919 QTL Glucocorticoid receptor expression 1
D18Mit163 18 43408013 to 43408159 146 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 163
Cpgi10005 18 43437733 to 43438558 825 CpG island CpG island 10005
Tssr153160 18 43438215 to 43438222 7 - TSS region transcription start site region 153160
Tssr153161 18 43438236 to 43438239 3 - TSS region transcription start site region 153161
Tssr153162 18 43438244 to 43438267 23 - TSS region transcription start site region 153162
Tssr153163 18 43438280 to 43438297 17 - TSS region transcription start site region 153163
Tssr153164 18 43438300 to 43438303 3 - TSS region transcription start site region 153164
Tssr153165 18 43438371 to 43438382 11 - TSS region transcription start site region 153165
Tssr153166 18 43438460 to 43438467 7 - TSS region transcription start site region 153166
Gm41714 18 43443776 to 43465462 21686 - lncRNA gene predicted gene, 41714
Gm3650 18 43472816 to 43475169 2353 + pseudogene predicted gene 3650
Eif3j2 18 43475418 to 43477796 2378 - protein coding gene eukaryotic translation initiation factor 3, subunit J2
Cpgi10006 18 43477528 to 43477892 364 CpG island CpG island 10006
Gm27325 18 43477704 to 43477777 73 - miRNA gene predicted gene, 27325
Tssr153167 18 43477764 to 43477801 37 - TSS region transcription start site region 153167
Jakmip2 18 43531408 to 43687773 156365 - protein coding gene janus kinase and microtubule interacting protein 2
Tssr153168 18 43546837 to 43546882 45 - TSS region transcription start site region 153168
Cpgi10007 18 43546876 to 43547085 209 CpG island CpG island 10007
Cpgi10008 18 43582006 to 43582266 260 CpG island CpG island 10008
Tssr153169 18 43634788 to 43634792 4 - TSS region transcription start site region 153169