Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:34296513-34686521

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apc 18 34220924 to 34322189 101265 + protein coding gene APC, WNT signaling pathway regulator
Tssr150452 18 34312798 to 34312826 28 + TSS region transcription start site region 150452
Tssr150453 18 34313160 to 34313173 13 + TSS region transcription start site region 150453
Tssr150454 18 34313185 to 34313202 17 + TSS region transcription start site region 150454
Tssr150455 18 34315150 to 34315160 10 + TSS region transcription start site region 150455
Tssr150456 18 34315758 to 34315770 12 + TSS region transcription start site region 150456
Tssr150457 18 34316481 to 34316520 39 + TSS region transcription start site region 150457
Cpgi9815 18 34330801 to 34331634 833 CpG island CpG island 9815
Srp19 18 34331121 to 34336599 5478 + protein coding gene signal recognition particle 19
Tssr150458 18 34331132 to 34331197 65 + TSS region transcription start site region 150458
Reep5 18 34344889 to 34373415 28526 - protein coding gene receptor accessory protein 5
Tssr152787 18 34347087 to 34347108 21 - TSS region transcription start site region 152787
Tssr152788 18 34349749 to 34349789 40 - TSS region transcription start site region 152788
Tssr152789 18 34371039 to 34371042 3 - TSS region transcription start site region 152789
Tssr152790 18 34371842 to 34371845 3 - TSS region transcription start site region 152790
Tssr152791 18 34371964 to 34371987 23 - TSS region transcription start site region 152791
Tssr152792 18 34372045 to 34372056 11 - TSS region transcription start site region 152792
Cpgi9816 18 34372424 to 34373920 1496 CpG island CpG island 9816
Tssr152793 18 34372444 to 34372486 42 - TSS region transcription start site region 152793
Tssr152794 18 34372491 to 34372500 9 - TSS region transcription start site region 152794
Tssr152795 18 34372501 to 34372523 22 - TSS region transcription start site region 152795
Tssr152796 18 34373298 to 34373306 8 - TSS region transcription start site region 152796
Tssr152797 18 34373313 to 34373443 130 - TSS region transcription start site region 152797
Tssr152798 18 34373502 to 34373520 18 - TSS region transcription start site region 152798
Tssr150459 18 34408485 to 34408494 9 + TSS region transcription start site region 150459
Tssr150460 18 34408506 to 34408511 5 + TSS region transcription start site region 150460
Cpgi9817 18 34409185 to 34409764 579 CpG island CpG island 9817
Tssr150461 18 34409363 to 34409371 8 + TSS region transcription start site region 150461
Tssr5274 18 34409397 to 34409407 10 + TSS region transcription start site region 5274
Tssr150462 18 34409415 to 34409458 43 + TSS region transcription start site region 150462
Pkd2l2 18 34409423 to 34442789 33366 + protein coding gene polycystic kidney disease 2-like 2
Gm17942 18 34421783 to 34422554 771 - pseudogene predicted gene, 17942
Fam13b 18 34442352 to 34506823 64471 - protein coding gene family with sequence similarity 13, member B
Tssr152799 18 34481398 to 34481444 46 - TSS region transcription start site region 152799
Tssr152800 18 34491513 to 34491521 8 - TSS region transcription start site region 152800
Cpgi9818 18 34505947 to 34507192 1245 CpG island CpG island 9818
Tssr152801 18 34506664 to 34506684 20 - TSS region transcription start site region 152801
Tssr152802 18 34506741 to 34506768 27 - TSS region transcription start site region 152802
Tssr152803 18 34506788 to 34506877 89 - TSS region transcription start site region 152803
Tssr152804 18 34507332 to 34507348 16 - TSS region transcription start site region 152804
Tssr152805 18 34508163 to 34508198 35 - TSS region transcription start site region 152805
n-R5s24 18 34509737 to 34509853 116 + rRNA gene nuclear encoded rRNA 5S 24
Tssr152806 18 34511968 to 34511999 31 - TSS region transcription start site region 152806
Tssr152807 18 34523028 to 34523050 22 - TSS region transcription start site region 152807
Tssr152808 18 34523058 to 34523071 13 - TSS region transcription start site region 152808
Tssr150463 18 34542223 to 34542226 3 + TSS region transcription start site region 150463
Tssr150464 18 34542320 to 34542335 15 + TSS region transcription start site region 150464
Wnt8a 18 34542328 to 34548061 5733 + protein coding gene wingless-type MMTV integration site family, member 8A
Cpgi9819 18 34542882 to 34543038 156 CpG island CpG island 9819
Cpgi9820 18 34547217 to 34547619 402 CpG island CpG island 9820
Nme5 18 34562634 to 34579115 16481 - protein coding gene NME/NM23 family member 5
Tssr152809 18 34578771 to 34578776 5 - TSS region transcription start site region 152809
Tssr152810 18 34579041 to 34579052 11 - TSS region transcription start site region 152810
Tssr152811 18 34579072 to 34579130 58 - TSS region transcription start site region 152811
4933408B17Rik 18 34579846 to 34597468 17622 - protein coding gene RIKEN cDNA 4933408B17 gene
Tssr152812 18 34595876 to 34595913 37 - TSS region transcription start site region 152812
Brd8 18 34598615 to 34624601 25986 - protein coding gene bromodomain containing 8
Tssr152813 18 34605425 to 34605432 7 - TSS region transcription start site region 152813
Gm41688 18 34611376 to 34612920 1544 - lncRNA gene predicted gene, 41688
Cpgi9821 18 34624084 to 34625222 1138 CpG island CpG island 9821
Tssr152814 18 34624562 to 34624591 29 - TSS region transcription start site region 152814
Tssr5275 18 34624600 to 34624602 2 - TSS region transcription start site region 5275
Tssr150465 18 34624621 to 34624629 8 + TSS region transcription start site region 150465
Kif20a 18 34624624 to 34633265 8641 + protein coding gene kinesin family member 20A
Tssr150466 18 34624634 to 34624662 28 + TSS region transcription start site region 150466
Tssr152815 18 34624772 to 34624815 43 - TSS region transcription start site region 152815
Tssr152816 18 34624822 to 34624844 22 - TSS region transcription start site region 152816
Tssr150467 18 34624955 to 34625000 45 + TSS region transcription start site region 150467
Tssr150468 18 34625009 to 34625031 22 + TSS region transcription start site region 150468
Tssr150469 18 34625042 to 34625053 11 + TSS region transcription start site region 150469
Cdc23 18 34630951 to 34651735 20784 - protein coding gene CDC23 cell division cycle 23
n-R5s25 18 34647400 to 34647518 118 + rRNA gene nuclear encoded rRNA 5S 25
Cpgi9822 18 34651130 to 34651865 735 CpG island CpG island 9822
Tssr152817 18 34651681 to 34651692 11 - TSS region transcription start site region 152817
Tssr152818 18 34651695 to 34651702 7 - TSS region transcription start site region 152818
Tssr152819 18 34651703 to 34651741 38 - TSS region transcription start site region 152819
Tssr152820 18 34651745 to 34651759 14 - TSS region transcription start site region 152820
Tssr152821 18 34652491 to 34652509 18 - TSS region transcription start site region 152821
D18Mit232 18 34667851 to 34667940 89 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 232
Cpgi9823 18 34679636 to 34679902 266 CpG island CpG island 9823