Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:31364355-35048862

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501 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23283 18 31389994 to 31390103 109 - miRNA gene predicted gene, 23283
Gm41681 18 31397610 to 31403371 5761 - lncRNA gene predicted gene, 41681
Gm18886 18 31422248 to 31422929 681 - pseudogene predicted gene, 18886
Syt4 18 31437808 to 31447406 9598 - protein coding gene synaptotagmin IV
Tssr152705 18 31439683 to 31439689 6 - TSS region transcription start site region 152705
Gm26658 18 31440318 to 31449099 8781 + lincRNA gene predicted gene, 26658
Cpgi9787 18 31447272 to 31447497 225 CpG island CpG island 9787
Tssr152706 18 31447327 to 31447328 1 - TSS region transcription start site region 152706
Tssr152707 18 31447348 to 31447376 28 - TSS region transcription start site region 152707
Tssr152708 18 31447383 to 31447407 24 - TSS region transcription start site region 152708
Gm25396 18 31466235 to 31466367 132 - snoRNA gene predicted gene, 25396
Gm5241 18 31519699 to 31520762 1063 - pseudogene predicted gene 5241
Gm38606 18 31556114 to 31571194 15080 - lncRNA gene predicted gene, 38606
Tssr150346 18 31568418 to 31568421 3 + TSS region transcription start site region 150346
Slc25a46 18 31580168 to 31609902 29734 - protein coding gene solute carrier family 25, member 46
Tssr152709 18 31582250 to 31582259 9 - TSS region transcription start site region 152709
Tssr152710 18 31597779 to 31597795 16 - TSS region transcription start site region 152710
Tssr152711 18 31605553 to 31605561 8 - TSS region transcription start site region 152711
Tssr152712 18 31607521 to 31607527 6 - TSS region transcription start site region 152712
Cpgi9788 18 31609274 to 31610209 935 CpG island CpG island 9788
B930094E09Rik 18 31609512 to 31610751 1239 + unclassified gene RIKEN cDNA B930094E09 gene
Tssr152713 18 31609893 to 31609927 34 - TSS region transcription start site region 152713
Tssr152714 18 31610508 to 31610513 5 - TSS region transcription start site region 152714
Tssr152715 18 31610516 to 31610546 30 - TSS region transcription start site region 152715
Tssr150347 18 31619498 to 31619509 11 + TSS region transcription start site region 150347
3110038A09Rik 18 31633272 to 31633902 630 unclassified gene RIKEN cDNA 3110038A09 gene
Cpgi9789 18 31633837 to 31635455 1618 CpG island CpG island 9789
Tssr150348 18 31634316 to 31634363 47 + TSS region transcription start site region 150348
Tssr150349 18 31634368 to 31634371 3 + TSS region transcription start site region 150349
Sap130 18 31634371 to 31723061 88690 + protein coding gene Sin3A associated protein
Tssr150350 18 31634374 to 31634390 16 + TSS region transcription start site region 150350
Tssr152716 18 31634769 to 31634811 42 - TSS region transcription start site region 152716
Tssr150351 18 31635074 to 31635138 64 + TSS region transcription start site region 150351
Tssr150352 18 31698650 to 31698659 9 + TSS region transcription start site region 150352
Gm50060 18 31738715 to 31739039 324 + pseudogene predicted gene, 50060
Cpgi9790 18 31759201 to 31760638 1437 CpG island CpG island 9790
Tssr150353 18 31759817 to 31759851 34 + TSS region transcription start site region 150353
Ammecr1l 18 31759826 to 31782743 22917 + protein coding gene AMME chromosomal region gene 1-like
Tssr150354 18 31759854 to 31759868 14 + TSS region transcription start site region 150354
Tssr150355 18 31759888 to 31759973 85 + TSS region transcription start site region 150355
Tssr150356 18 31759976 to 31760003 27 + TSS region transcription start site region 150356
Tssr150357 18 31760010 to 31760034 24 + TSS region transcription start site region 150357
Tssr150358 18 31760581 to 31760656 75 + TSS region transcription start site region 150358
Tssr150359 18 31771953 to 31771988 35 + TSS region transcription start site region 150359
Tssr150360 18 31775851 to 31775852 1 + TSS region transcription start site region 150360
Tssr150361 18 31777404 to 31777416 12 + TSS region transcription start site region 150361
Tssr150362 18 31777484 to 31777487 3 + TSS region transcription start site region 150362
Tssr150363 18 31780711 to 31780739 28 + TSS region transcription start site region 150363
Gm26533 18 31781226 to 31789045 7819 - lincRNA gene predicted gene, 26533
Cpgi9791 18 31788850 to 31789389 539 CpG island CpG island 9791
Tssr150364 18 31789120 to 31789171 51 + TSS region transcription start site region 150364
Polr2d 18 31789159 to 31796701 7542 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide D
Cpgi9792 18 31803764 to 31804679 915 CpG island CpG island 9792
Tssr150365 18 31804084 to 31804120 36 + TSS region transcription start site region 150365
Wdr33 18 31804090 to 31907397 103307 + protein coding gene WD repeat domain 33
Gm6665 18 31819865 to 31820413 548 - pseudogene predicted gene 6665
Tssr150366 18 31857040 to 31857049 9 + TSS region transcription start site region 150366
Tssr150367 18 31857074 to 31857085 11 + TSS region transcription start site region 150367
Gm26823 18 31859082 to 31861764 2682 - lincRNA gene predicted gene, 26823
Tssr150368 18 31860515 to 31860530 15 + TSS region transcription start site region 150368
Tssr150369 18 31860610 to 31860625 15 + TSS region transcription start site region 150369
Tssr150370 18 31881241 to 31881251 10 + TSS region transcription start site region 150370
Tssr5267 18 31903516 to 31903517 1 - TSS region transcription start site region 5267
Sft2d3 18 31909098 to 31911824 2726 - protein coding gene SFT2 domain containing 3
Cpgi9793 18 31910232 to 31911492 1260 CpG island CpG island 9793
Tssr150371 18 31910762 to 31910848 86 + TSS region transcription start site region 150371
1810036N14Rik 18 31910819 to 31911918 1099 unclassified gene RIKEN cDNA 1810036N14 gene
Tssr152717 18 31911250 to 31911278 28 - TSS region transcription start site region 152717
Tssr150372 18 31922269 to 31922272 3 + TSS region transcription start site region 150372
Tssr150373 18 31922286 to 31922304 18 + TSS region transcription start site region 150373
Lims2 18 31922290 to 31958619 36329 + protein coding gene LIM and senescent cell antigen like domains 2
Cpgi9794 18 31931060 to 31931674 614 CpG island CpG island 9794
Tssr150374 18 31931275 to 31931283 8 + TSS region transcription start site region 150374
Tssr150375 18 31931305 to 31931348 43 + TSS region transcription start site region 150375
Tssr150376 18 31931453 to 31931460 7 + TSS region transcription start site region 150376
Tssr150377 18 31931470 to 31931520 50 + TSS region transcription start site region 150377
Tssr150378 18 31937270 to 31937288 18 + TSS region transcription start site region 150378
Gm46619 18 31937560 to 31939110 1550 - lncRNA gene predicted gene, 46619
Cpgi9795 18 31938582 to 31939512 930 CpG island CpG island 9795
Gpr17 18 31942997 to 31949636 6639 - protein coding gene G protein-coupled receptor 17
Tssr152718 18 31949571 to 31949588 17 - TSS region transcription start site region 152718
Tssr152719 18 31949694 to 31949710 16 - TSS region transcription start site region 152719
Tssr152720 18 31949714 to 31949742 28 - TSS region transcription start site region 152720
Tssr152721 18 31949795 to 31949814 19 - TSS region transcription start site region 152721
Tssr152722 18 31949822 to 31949835 13 - TSS region transcription start site region 152722
Tssr152723 18 31949870 to 31949884 14 - TSS region transcription start site region 152723
Tssr150379 18 31954830 to 31954872 42 + TSS region transcription start site region 150379
Tssr150380 18 31955107 to 31955129 22 + TSS region transcription start site region 150380
Tssr150381 18 31958014 to 31958039 25 + TSS region transcription start site region 150381
Myo7b 18 31959234 to 32036931 77697 - protein coding gene myosin VIIB
Tssr152724 18 31998130 to 31998157 27 - TSS region transcription start site region 152724
Gm16344 18 32021740 to 32026610 4870 + antisense lncRNA gene predicted gene 16344
Gm16345 18 32031089 to 32031246 157 + pseudogene predicted gene 16345
Tssr152725 18 32035176 to 32035180 4 - TSS region transcription start site region 152725
Tssr152726 18 32036941 to 32037019 78 - TSS region transcription start site region 152726
Gm35010 18 32056113 to 32057494 1381 + pseudogene predicted gene, 35010
Cpgi9796 18 32067522 to 32068316 794 CpG island CpG island 9796
Tssr150382 18 32067729 to 32067811 82 + TSS region transcription start site region 150382
Iws1 18 32067741 to 32104328 36587 + protein coding gene IWS1, SUPT6 interacting protein
Tssr150383 18 32067973 to 32068013 40 + TSS region transcription start site region 150383
Tssr152727 18 32068158 to 32068195 37 - TSS region transcription start site region 152727
Tssr150384 18 32068883 to 32068887 4 + TSS region transcription start site region 150384
Gm49966 18 32112041 to 32112307 266 - pseudogene predicted gene, 49966
4933435E02Rik 18 32112459 to 32120412 7953 unclassified gene RIKEN cDNA 4933435E02 gene
Proc 18 32123126 to 32139570 16444 - protein coding gene protein C
Cpgi9797 18 32133084 to 32133510 426 CpG island CpG island 9797
Tssr152728 18 32134659 to 32134690 31 - TSS region transcription start site region 152728
Tssr152729 18 32135952 to 32135954 2 - TSS region transcription start site region 152729
Tssr152730 18 32136511 to 32136514 3 - TSS region transcription start site region 152730
Tssr152731 18 32138020 to 32138027 7 - TSS region transcription start site region 152731
Tssr152732 18 32138162 to 32138169 7 - TSS region transcription start site region 152732
Tssr152733 18 32138175 to 32138199 24 - TSS region transcription start site region 152733
Cpgi9798 18 32139500 to 32139888 388 CpG island CpG island 9798
Gm5969 18 32140729 to 32141830 1101 + pseudogene predicted gene 5969
Cpgi9799 18 32147545 to 32147785 240 CpG island CpG island 9799
Tssr5268 18 32147743 to 32147756 13 + TSS region transcription start site region 5268
Gm26717 18 32152427 to 32158291 5864 + lincRNA gene predicted gene, 26717
Gm34806 18 32154406 to 32162759 8353 - lncRNA gene predicted gene, 34806
Cpgi9800 18 32162560 to 32163859 1299 CpG island CpG island 9800
Tssr150385 18 32162972 to 32162982 10 + TSS region transcription start site region 150385
Tssr5269 18 32162991 to 32162992 1 + TSS region transcription start site region 5269
Tssr150386 18 32163015 to 32163020 5 + TSS region transcription start site region 150386
Tssr150387 18 32163042 to 32163053 11 + TSS region transcription start site region 150387
Tssr150388 18 32163062 to 32163069 7 + TSS region transcription start site region 150388
Tssr150389 18 32163073 to 32163115 42 + TSS region transcription start site region 150389
Map3k2 18 32163089 to 32236751 73662 + protein coding gene mitogen-activated protein kinase kinase kinase 2
Cpgi9801 18 32239991 to 32240746 755 CpG island CpG island 9801
Tssr152734 18 32240227 to 32240274 47 - TSS region transcription start site region 152734
Ercc3 18 32240304 to 32270151 29847 + protein coding gene excision repair cross-complementing rodent repair deficiency, complementation group 3
Tssr150390 18 32240309 to 32240342 33 + TSS region transcription start site region 150390
Gm22325 18 32293350 to 32293657 307 + unclassified non-coding RNA gene predicted gene, 22325
D18Mit88 18 32312317 to 32312456 139 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 88
D18Mit200 18 32322947 to 32323067 120 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 200
A830052D11Rik 18 32359053 to 32378278 19225 - lincRNA gene RIKEN cDNA A830052D11 gene
Cpgi9802 18 32376748 to 32378184 1436 CpG island CpG island 9802
Tssr150391 18 32377135 to 32377139 4 + TSS region transcription start site region 150391
Tssr150392 18 32377176 to 32377289 113 + TSS region transcription start site region 150392
Bin1 18 32377230 to 32435737 58507 + protein coding gene bridging integrator 1
Tssr150393 18 32377294 to 32377317 23 + TSS region transcription start site region 150393
Tssr150394 18 32377365 to 32377368 3 + TSS region transcription start site region 150394
Tssr150395 18 32385559 to 32385572 13 + TSS region transcription start site region 150395
Tssr150396 18 32395911 to 32395951 40 + TSS region transcription start site region 150396
Tssr150397 18 32397554 to 32397561 7 + TSS region transcription start site region 150397
Tssr150398 18 32397580 to 32397595 15 + TSS region transcription start site region 150398
Tssr150399 18 32397617 to 32397678 61 + TSS region transcription start site region 150399
Tssr152735 18 32399983 to 32399989 6 - TSS region transcription start site region 152735
Tssr150400 18 32400252 to 32400281 29 + TSS region transcription start site region 150400
Tssr152736 18 32405459 to 32405467 8 - TSS region transcription start site region 152736
Tssr150401 18 32407593 to 32407630 37 + TSS region transcription start site region 150401
Tssr150402 18 32430904 to 32430928 24 + TSS region transcription start site region 150402
Tssr150403 18 32431969 to 32432017 48 + TSS region transcription start site region 150403
Tssr150404 18 32435256 to 32435281 25 + TSS region transcription start site region 150404
Tssr152737 18 32448409 to 32448422 13 - TSS region transcription start site region 152737
Tssr152738 18 32448432 to 32448446 14 - TSS region transcription start site region 152738
Gm35060 18 32458085 to 32462910 4825 - protein coding gene predicted gene, 35060
Tssr152739 18 32462462 to 32462468 6 - TSS region transcription start site region 152739
Tssr152740 18 32462490 to 32462504 14 - TSS region transcription start site region 152740
Tssr152741 18 32462505 to 32462512 7 - TSS region transcription start site region 152741
D18Mit60 18 32489109 to 32489313 204 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 60
Gm20136 18 32499500 to 32500432 932 - pseudogene predicted gene, 20136
Gm44577 18 32508209 to 32518537 10328 + bidirectional promoter lncRNA gene predicted gene 44577
Gypc 18 32528322 to 32560034 31712 - protein coding gene glycophorin C
Tssr152742 18 32553657 to 32553673 16 - TSS region transcription start site region 152742
Tssr152743 18 32555425 to 32555430 5 - TSS region transcription start site region 152743
Tssr150405 18 32558470 to 32558476 6 + TSS region transcription start site region 150405
Cpgi9803 18 32559477 to 32560078 601 CpG island CpG island 9803
Tssr152744 18 32559823 to 32559836 13 - TSS region transcription start site region 152744
Tssr152745 18 32559839 to 32559855 16 - TSS region transcription start site region 152745
Tssr152746 18 32559857 to 32559887 30 - TSS region transcription start site region 152746
Tssr152747 18 32559914 to 32560018 104 - TSS region transcription start site region 152747
Tssr152748 18 32560125 to 32560145 20 - TSS region transcription start site region 152748
Gm35480 18 32585357 to 32591702 6345 + lncRNA gene predicted gene, 35480
Gm25826 18 32621920 to 32622056 136 - snoRNA gene predicted gene, 25826
4930455D15Rik 18 32663642 to 32837287 173645 - lincRNA gene RIKEN cDNA 4930455D15 gene
D18Mit59 18 32748623 to 32748796 173 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 59
Tslp 18 32815383 to 32819797 4414 + protein coding gene thymic stromal lymphopoietin
Tssr150406 18 32816854 to 32816865 11 + TSS region transcription start site region 150406
Tssr150407 18 32816897 to 32816942 45 + TSS region transcription start site region 150407
Tssr150408 18 32817027 to 32817032 5 + TSS region transcription start site region 150408
Gm26378 18 32820693 to 32820799 106 + snRNA gene predicted gene, 26378
Tssr152749 18 32835309 to 32835313 4 - TSS region transcription start site region 152749
Cpgi9804 18 32836908 to 32837751 843 CpG island CpG island 9804
Wdr36 18 32837225 to 32866955 29730 + protein coding gene WD repeat domain 36
Tssr150409 18 32837229 to 32837240 11 + TSS region transcription start site region 150409
Tssr150410 18 32837245 to 32837266 21 + TSS region transcription start site region 150410
Tssr150411 18 32837271 to 32837307 36 + TSS region transcription start site region 150411
Tssr150412 18 32837309 to 32837332 23 + TSS region transcription start site region 150412
Tssr150413 18 32837338 to 32837353 15 + TSS region transcription start site region 150413
Tssr150414 18 32866169 to 32866173 4 + TSS region transcription start site region 150414
Mir6361 18 32880573 to 32880673 100 - miRNA gene microRNA 6361
2310026I22Rik 18 32923799 to 32934736 10937 - lincRNA gene RIKEN cDNA 2310026I22 gene
Camk4 18 32934931 to 33191228 256297 + protein coding gene calcium/calmodulin-dependent protein kinase IV
Tssr150415 18 32934940 to 32934978 38 + TSS region transcription start site region 150415
Cpgi9805 18 32938662 to 32939871 1209 CpG island CpG island 9805
Tssr150416 18 32938765 to 32938772 7 + TSS region transcription start site region 150416
Tssr150417 18 32938793 to 32938804 11 + TSS region transcription start site region 150417
Tssr150418 18 32938877 to 32938880 3 + TSS region transcription start site region 150418
Tssr150419 18 32938891 to 32938894 3 + TSS region transcription start site region 150419
Tssr150420 18 32938901 to 32938910 9 + TSS region transcription start site region 150420
Tssr150421 18 32938916 to 32938928 12 + TSS region transcription start site region 150421