Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 18:28843832-31723844

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq18 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 18
Pwbwq17 18 18132472 to 30437766 12305294 QTL post-weaning body weight QTL 17
Ogrq6 18 18132472 to 30437766 12305294 QTL overall growth rate QTL 6
4930474G06Rik 18 28560164 to 28998176 438012 + lncRNA gene RIKEN cDNA 4930474G06 gene
Gm33948 18 28872188 to 28924124 51936 + lncRNA gene predicted gene, 33948
Gm34743 18 29245347 to 29246439 1092 + pseudogene predicted gene, 34743
Tssr150340 18 29333414 to 29333426 12 + TSS region transcription start site region 150340
Cpgi9785 18 29344742 to 29344932 190 CpG island CpG island 9785
4930578E11Rik 18 29396716 to 29496416 99700 - lncRNA gene RIKEN cDNA 4930578E11 gene
Tssr150341 18 29442185 to 29442204 19 + TSS region transcription start site region 150341
4930527G23Rik 18 29442200 to 29466107 23907 + lncRNA gene RIKEN cDNA 4930527G23 gene
Tssr152688 18 29496513 to 29496519 6 - TSS region transcription start site region 152688
Tssr152689 18 29496545 to 29496555 10 - TSS region transcription start site region 152689
Tssr152690 18 29496561 to 29496576 15 - TSS region transcription start site region 152690
Gm34136 18 29529886 to 29539725 9839 - lncRNA gene predicted gene, 34136
Gm34182 18 29633695 to 29639805 6110 - lncRNA gene predicted gene, 34182
Gm7917 18 29657054 to 29657596 542 - pseudogene predicted gene 7917
D18Mit86 18 29660341 to 29660534 193 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 86
Tssr5264 18 29733686 to 29733691 5 + TSS region transcription start site region 5264
D18Mit175 18 29746671 to 29746785 114 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 175
Gm41680 18 29759854 to 29774606 14752 - lncRNA gene predicted gene, 41680
Tssr5265 18 29785897 to 29785898 1 - TSS region transcription start site region 5265
D18Mit233 18 29801485 to 29801606 121 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 233
Tssr152691 18 30146550 to 30146551 1 - TSS region transcription start site region 152691
Gm34327 18 30198980 to 30238982 40002 - lncRNA gene predicted gene, 34327
D18Dcr6 18 30234888 to 30234985 97 DNA segment DNA Segment, Chr 18, Derry C. Roopenian 6
Gm49980 18 30267249 to 30272133 4884 + lincRNA gene predicted gene, 49980
Cpgi9786 18 30272690 to 30273296 606 CpG island CpG island 9786
Pik3c3 18 30272747 to 30348126 75379 + protein coding gene phosphatidylinositol 3-kinase catalytic subunit type 3
Tssr150342 18 30272829 to 30272931 102 + TSS region transcription start site region 150342
Tssr150343 18 30283832 to 30283844 12 + TSS region transcription start site region 150343
Tssr150344 18 30322421 to 30322423 2 + TSS region transcription start site region 150344
Gm7926 18 30419686 to 30420060 374 - pseudogene predicted gene 7926
Tssr152692 18 30420105 to 30420111 6 - TSS region transcription start site region 152692
Gm7930 18 30428256 to 30429861 1605 - pseudogene predicted gene 7930
D18Mit234 18 30456695 to 30456836 141 DNA segment DNA Segment, Chr 18, Massachusetts Institute of Technology 234
Rpl29-ps5 18 30459082 to 30459544 462 - pseudogene ribosomal protein L29, pseudogene 5
Tssr152693 18 30459594 to 30459600 6 - TSS region transcription start site region 152693
Gm22870 18 30476407 to 30476518 111 + snoRNA gene predicted gene, 22870
Gm7936 18 30495004 to 30495373 369 - pseudogene predicted pseudogene 7936
Cath6 18 30504073 to 30504073 0 QTL carotid atherosclerosis 6
Tssr5266 18 30524667 to 30524672 5 - TSS region transcription start site region 5266
Gm34572 18 30531379 to 30543204 11825 + lncRNA gene predicted gene, 34572
D18Mit159 18 30575417 to 30575642 225 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 159
Gm41780 18 30608537 to 30608890 353 - pseudogene predicted gene, 41780
Tssr152694 18 30609055 to 30609056 1 - TSS region transcription start site region 152694
Gm20952 18 30613587 to 30615016 1429 + pseudogene predicted gene, 20952
D18Mit225 18 30615771 to 30615886 115 DNA segment DNA segment, Chr 18, Massachusetts Institute of Technology 225
Rit2 18 30974314 to 31317128 342814 - protein coding gene Ras-like without CAAX 2
Tssr152695 18 30975268 to 30975279 11 - TSS region transcription start site region 152695
Gm18651 18 30979522 to 30980724 1202 - pseudogene predicted gene, 18651
Tssr152696 18 31243142 to 31243186 44 - TSS region transcription start site region 152696
Tssr152697 18 31316902 to 31316911 9 - TSS region transcription start site region 152697
Tssr152698 18 31316915 to 31316926 11 - TSS region transcription start site region 152698
Tssr152699 18 31316959 to 31316970 11 - TSS region transcription start site region 152699
Tssr152700 18 31316982 to 31316991 9 - TSS region transcription start site region 152700
Tssr152701 18 31317001 to 31317041 40 - TSS region transcription start site region 152701
Tssr152702 18 31317043 to 31317128 85 - TSS region transcription start site region 152702
Tssr152703 18 31317138 to 31317149 11 - TSS region transcription start site region 152703
Tssr152704 18 31317279 to 31317307 28 - TSS region transcription start site region 152704
Tssr150345 18 31324469 to 31324476 7 + TSS region transcription start site region 150345
Gm7941 18 31349183 to 31350204 1021 - pseudogene predicted gene 7941
Gm23283 18 31389994 to 31390103 109 - miRNA gene predicted gene, 23283
Gm41681 18 31397610 to 31403371 5761 - lncRNA gene predicted gene, 41681
Gm18886 18 31422248 to 31422929 681 - pseudogene predicted gene, 18886
Syt4 18 31437808 to 31447406 9598 - protein coding gene synaptotagmin IV
Tssr152705 18 31439683 to 31439689 6 - TSS region transcription start site region 152705
Gm26658 18 31440318 to 31449099 8781 + lincRNA gene predicted gene, 26658
Cpgi9787 18 31447272 to 31447497 225 CpG island CpG island 9787
Tssr152706 18 31447327 to 31447328 1 - TSS region transcription start site region 152706
Tssr152707 18 31447348 to 31447376 28 - TSS region transcription start site region 152707
Tssr152708 18 31447383 to 31447407 24 - TSS region transcription start site region 152708
Gm25396 18 31466235 to 31466367 132 - snoRNA gene predicted gene, 25396
Gm5241 18 31519699 to 31520762 1063 - pseudogene predicted gene 5241
Gm38606 18 31556114 to 31571194 15080 - lncRNA gene predicted gene, 38606
Tssr150346 18 31568418 to 31568421 3 + TSS region transcription start site region 150346
Slc25a46 18 31580168 to 31609902 29734 - protein coding gene solute carrier family 25, member 46
Tssr152709 18 31582250 to 31582259 9 - TSS region transcription start site region 152709
Tssr152710 18 31597779 to 31597795 16 - TSS region transcription start site region 152710
Tssr152711 18 31605553 to 31605561 8 - TSS region transcription start site region 152711
Tssr152712 18 31607521 to 31607527 6 - TSS region transcription start site region 152712
Cpgi9788 18 31609274 to 31610209 935 CpG island CpG island 9788
B930094E09Rik 18 31609512 to 31610751 1239 + unclassified gene RIKEN cDNA B930094E09 gene
Tssr152713 18 31609893 to 31609927 34 - TSS region transcription start site region 152713
Tssr152714 18 31610508 to 31610513 5 - TSS region transcription start site region 152714
Tssr152715 18 31610516 to 31610546 30 - TSS region transcription start site region 152715
Tssr150347 18 31619498 to 31619509 11 + TSS region transcription start site region 150347
3110038A09Rik 18 31633272 to 31633902 630 unclassified gene RIKEN cDNA 3110038A09 gene
Cpgi9789 18 31633837 to 31635455 1618 CpG island CpG island 9789
Tssr150348 18 31634316 to 31634363 47 + TSS region transcription start site region 150348
Tssr150349 18 31634368 to 31634371 3 + TSS region transcription start site region 150349
Sap130 18 31634371 to 31723061 88690 + protein coding gene Sin3A associated protein
Tssr150350 18 31634374 to 31634390 16 + TSS region transcription start site region 150350
Tssr152716 18 31634769 to 31634811 42 - TSS region transcription start site region 152716
Tssr150351 18 31635074 to 31635138 64 + TSS region transcription start site region 150351
Tssr150352 18 31698650 to 31698659 9 + TSS region transcription start site region 150352