Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:88644241-90119993

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Axtq3 17 74282094 to 90087842 15805748 QTL anxiety QTL 3
Aaj4 17 74282094 to 90087842 15805748 QTL anxiety in A/J 4
Ston1 17 88597635 to 88645724 48089 + protein coding gene stonin 1
Gm31903 17 88653029 to 88654062 1033 - lncRNA gene predicted gene, 31903
Gm38460 17 88653861 to 88662686 8825 + lncRNA gene predicted gene, 38460
Gm50056 17 88662406 to 88664765 2359 - lincRNA gene predicted gene, 50056
Cpgi9645 17 88668493 to 88668775 282 CpG island CpG island 9645
Tssr146249 17 88668643 to 88668654 11 + TSS region transcription start site region 146249
Gtf2a1l 17 88668660 to 88715152 46492 + protein coding gene general transcription factor IIA, 1-like
Tssr146250 17 88668662 to 88668701 39 + TSS region transcription start site region 146250
Lhcgr 17 88716861 to 88792059 75198 - protein coding gene luteinizing hormone/choriogonadotropin receptor
Cpgi9646 17 88753382 to 88753962 580 CpG island CpG island 9646
Cpgi9647 17 88754883 to 88755427 544 CpG island CpG island 9647
Cpgi9648 17 88791720 to 88792043 323 CpG island CpG island 9648
Tssr149809 17 88791978 to 88791996 18 - TSS region transcription start site region 149809
Tssr149810 17 88791999 to 88792000 1 - TSS region transcription start site region 149810
Tssr149811 17 88792007 to 88792022 15 - TSS region transcription start site region 149811
Gm9407 17 88856233 to 88856622 389 - pseudogene predicted gene 9407
Marcksl1-ps2 17 88982497 to 88983100 603 - pseudogene MARCKS-like 1, pseudogene 2
Fshr 17 88984952 to 89200675 215723 - protein coding gene follicle stimulating hormone receptor
Tssr5231 17 89099962 to 89099974 12 + TSS region transcription start site region 5231
Tssr149812 17 89200684 to 89200697 13 - TSS region transcription start site region 149812
Tssr149813 17 89200703 to 89200719 16 - TSS region transcription start site region 149813
4933400B14Rik 17 89320227 to 89327333 7106 + lncRNA gene RIKEN cDNA 4933400B14 gene
Gm4719 17 89379241 to 89384993 5752 + lncRNA gene predicted gene 4719
Gm50061 17 89701897 to 89752526 50629 - lincRNA gene predicted gene, 50061
Tssr146251 17 89718097 to 89718098 1 + TSS region transcription start site region 146251
Gm10184 17 89908475 to 89910447 1972 - pseudogene predicted pseudogene 10184
Tssr149814 17 89910439 to 89910446 7 - TSS region transcription start site region 149814
Gm41653 17 89958752 to 89976632 17880 - lncRNA gene predicted gene, 41653
Nrxn1 17 90033631 to 91093071 1059440 - protein coding gene neurexin I
Tssr149815 17 90035842 to 90035863 21 - TSS region transcription start site region 149815
Tssr149816 17 90036279 to 90036290 11 - TSS region transcription start site region 149816
Tssr149817 17 90036433 to 90036436 3 - TSS region transcription start site region 149817
Tssr149818 17 90036684 to 90036713 29 - TSS region transcription start site region 149818
Tssr149819 17 90036720 to 90036741 21 - TSS region transcription start site region 149819
Tssr149820 17 90036744 to 90036758 14 - TSS region transcription start site region 149820
Tssr149821 17 90036775 to 90036786 11 - TSS region transcription start site region 149821
Tssr149822 17 90036807 to 90036818 11 - TSS region transcription start site region 149822
Tssr146252 17 90036895 to 90036901 6 + TSS region transcription start site region 146252
Tssr149823 17 90037141 to 90037164 23 - TSS region transcription start site region 149823
Tssr149824 17 90037188 to 90037204 16 - TSS region transcription start site region 149824
Tssr149825 17 90037209 to 90037231 22 - TSS region transcription start site region 149825
Tssr149826 17 90037285 to 90037300 15 - TSS region transcription start site region 149826
Tssr146253 17 90048080 to 90048084 4 + TSS region transcription start site region 146253
Tssr5232 17 90075119 to 90075126 7 + TSS region transcription start site region 5232
D17Mit221 17 90087704 to 90087842 138 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 221
Nhdlq3 17 90087704 to 90087842 138 QTL non-HDL QTL 3
Nilac11 17 90087704 to 90087842 138 QTL nicotine induced locomotor activity 11
Tssr149827 17 90088194 to 90088227 33 - TSS region transcription start site region 149827
Tssr149828 17 90088279 to 90088320 41 - TSS region transcription start site region 149828
Tssr149829 17 90088322 to 90088341 19 - TSS region transcription start site region 149829
Tssr149830 17 90088343 to 90088373 30 - TSS region transcription start site region 149830
Tssr146254 17 90088461 to 90088508 47 + TSS region transcription start site region 146254