Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:58520217-61287886

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi9406 17 58567793 to 58568017 224 CpG island CpG island 9406
Gm6149 17 58579030 to 58579967 937 - pseudogene predicted gene 6149
Gm49849 17 58583092 to 58583635 543 + pseudogene predicted gene, 49849
Gm5815 17 58593614 to 58594840 1226 + pseudogene predicted pseudogene 5815
A330072L02Rik 17 58680347 to 58836041 155694 - lincRNA gene RIKEN cDNA A330072L02 gene
Gm9284 17 58803053 to 58803626 573 - pseudogene predicted gene 9284
Pdzph1 17 58878808 to 58991375 112567 - protein coding gene PDZ and pleckstrin homology domains 1
A930025A13Rik 17 58889209 to 58893212 4003 unclassified non-coding RNA gene RIKEN cDNA A930025A13 gene
Tssr148979 17 58908539 to 58908549 10 - TSS region transcription start site region 148979
Tssr148980 17 58932526 to 58932539 13 - TSS region transcription start site region 148980
Tssr148981 17 58934612 to 58934620 8 - TSS region transcription start site region 148981
Gm33751 17 58943933 to 58952582 8649 + lncRNA gene predicted gene, 33751
D17Mit150 17 58953961 to 58954073 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 150
Tssr148982 17 58991343 to 58991354 11 - TSS region transcription start site region 148982
Tssr148983 17 58991390 to 58991395 5 - TSS region transcription start site region 148983
Tssr145530 17 58996243 to 58996278 35 + TSS region transcription start site region 145530
Nudt12os 17 58996263 to 59024980 28717 + antisense lncRNA gene nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand
Nudt12 17 59000107 to 59013367 13260 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 12
Cpgi9407 17 59012930 to 59013358 428 CpG island CpG island 9407
Tssr148984 17 59013264 to 59013343 79 - TSS region transcription start site region 148984
Tssr5186 17 59040824 to 59040825 1 - TSS region transcription start site region 5186
n-TVcac3 17 59068708 to 59068780 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon CAC)
Tssr145531 17 59071376 to 59071378 2 + TSS region transcription start site region 145531
Gm23769 17 59225723 to 59225843 120 - snoRNA gene predicted gene, 23769
Tssr145532 17 59424719 to 59424721 2 + TSS region transcription start site region 145532
D17Mit1004 17 59455153 to 59455256 103 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 1004
Gm23203 17 59569559 to 59569665 106 - snRNA gene predicted gene, 23203
Gm49851 17 59599141 to 59599636 495 + pseudogene predicted gene, 49851
Tssr148985 17 59640773 to 59640775 2 - TSS region transcription start site region 148985
Gm49852 17 59656595 to 59657060 465 + pseudogene predicted gene, 49852
D17Mit203 17 59676854 to 59676974 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 203
Gm49853 17 59855217 to 59952886 97669 + lincRNA gene predicted gene, 49853
Gm29051 17 60001418 to 60130875 129457 - lincRNA gene predicted gene 29051
Gm23447 17 60486007 to 60486169 162 + snRNA gene predicted gene, 23447
Gm4512 17 60490542 to 60491053 511 + pseudogene predicted gene 4512
Gm18521 17 60615767 to 60616592 825 - pseudogene predicted gene, 18521
Tssr145533 17 60644716 to 60644718 2 + TSS region transcription start site region 145533
D17Dcr15 17 60692968 to 60693071 103 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 15
Gm49856 17 60739233 to 60739578 345 + pseudogene predicted gene, 49856
Gm33890 17 60943979 to 60958946 14967 - lincRNA gene predicted gene, 33890
Gm18070 17 61016618 to 61017365 747 + pseudogene predicted gene, 18070
D17Dcr16 17 61217127 to 61217223 96 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 16
D17Dcr26 17 61230412 to 61230516 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 26
Gm23773 17 61259651 to 61259946 295 + unclassified non-coding RNA gene predicted gene, 23773