Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46002035-46264216

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vegfa 17 46016993 to 46032369 15376 - protein coding gene vascular endothelial growth factor A
Tssr148285 17 46017635 to 46017646 11 - TSS region transcription start site region 148285
Tssr148286 17 46017753 to 46017770 17 - TSS region transcription start site region 148286
Tssr148287 17 46018252 to 46018272 20 - TSS region transcription start site region 148287
Tssr148288 17 46018670 to 46018682 12 - TSS region transcription start site region 148288
Tssr148289 17 46024502 to 46024516 14 - TSS region transcription start site region 148289
Cpgi9211 17 46030196 to 46033044 2848 CpG island CpG island 9211
Tssr148290 17 46030597 to 46030621 24 - TSS region transcription start site region 148290
Tssr144812 17 46030640 to 46030643 3 + TSS region transcription start site region 144812
Tssr148291 17 46030932 to 46030942 10 - TSS region transcription start site region 148291
Tssr148292 17 46030951 to 46031016 65 - TSS region transcription start site region 148292
Tssr148293 17 46031813 to 46031863 50 - TSS region transcription start site region 148293
Tssr148294 17 46031867 to 46031886 19 - TSS region transcription start site region 148294
Tssr148295 17 46032117 to 46032131 14 - TSS region transcription start site region 148295
Tssr148296 17 46032141 to 46032152 11 - TSS region transcription start site region 148296
Tssr148297 17 46032366 to 46032383 17 - TSS region transcription start site region 148297
Gm36200 17 46067335 to 46084266 16931 - lincRNA gene predicted gene, 36200
Tssr148298 17 46073710 to 46073753 43 - TSS region transcription start site region 148298
Cpgi9212 17 46073793 to 46074201 408 CpG island CpG island 9212
Cpgi9213 17 46086276 to 46086502 226 CpG island CpG island 9213
Gm19969 17 46094503 to 46094671 168 - pseudogene predicted gene, 19969
Tssr148299 17 46096634 to 46096647 13 - TSS region transcription start site region 148299
Tssr148300 17 46096658 to 46096667 9 - TSS region transcription start site region 148300
Tssr144813 17 46109010 to 46109027 17 + TSS region transcription start site region 144813
Cpgi9214 17 46110753 to 46111323 570 CpG island CpG island 9214
Tssr144814 17 46110982 to 46111022 40 + TSS region transcription start site region 144814
Mrps18a 17 46111004 to 46128908 17904 + protein coding gene mitochondrial ribosomal protein S18A
Rsph9 17 46122035 to 46144216 22181 - protein coding gene radial spoke head 9 homolog (Chlamydomonas)
Tssr144815 17 46122749 to 46122774 25 + TSS region transcription start site region 144815
Tssr5133 17 46124227 to 46124230 3 + TSS region transcription start site region 5133
Tssr144816 17 46124263 to 46124278 15 + TSS region transcription start site region 144816
Tssr144817 17 46124287 to 46124313 26 + TSS region transcription start site region 144817
D17Mit200 17 46138660 to 46138782 122 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 200
D17Dcr9 17 46138715 to 46138841 126 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 9
Cpgi9215 17 46143820 to 46144336 516 CpG island CpG island 9215
Tssr148301 17 46144156 to 46144218 62 - TSS region transcription start site region 148301
Mad2l1bp 17 46147385 to 46153551 6166 - protein coding gene MAD2L1 binding protein
Cpgi9216 17 46153300 to 46153682 382 CpG island CpG island 9216
Tssr148302 17 46153497 to 46153511 14 - TSS region transcription start site region 148302
Tssr148303 17 46153517 to 46153543 26 - TSS region transcription start site region 148303
D17Mit138 17 46158635 to 46158776 141 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 138
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Tssr144818 17 46159212 to 46159223 11 + TSS region transcription start site region 144818
Tssr144819 17 46159268 to 46159277 9 + TSS region transcription start site region 144819
Tssr144820 17 46159565 to 46159611 46 + TSS region transcription start site region 144820
Tssr148304 17 46160410 to 46160417 7 - TSS region transcription start site region 148304
Tssr144821 17 46160561 to 46160577 16 + TSS region transcription start site region 144821
Cpgi9217 17 46160723 to 46161349 626 CpG island CpG island 9217
Tssr144822 17 46161021 to 46161072 51 + TSS region transcription start site region 144822
Gtpbp2 17 46161032 to 46169370 8338 + protein coding gene GTP binding protein 2
Tssr144823 17 46161074 to 46161085 11 + TSS region transcription start site region 144823
Tssr144824 17 46161126 to 46161148 22 + TSS region transcription start site region 144824
Tssr144825 17 46161149 to 46161168 19 + TSS region transcription start site region 144825
Tssr144826 17 46163075 to 46163121 46 + TSS region transcription start site region 144826
Tssr144827 17 46163153 to 46163183 30 + TSS region transcription start site region 144827
Tssr144828 17 46163202 to 46163225 23 + TSS region transcription start site region 144828
Tssr144829 17 46163232 to 46163252 20 + TSS region transcription start site region 144829
Tssr144830 17 46163456 to 46163486 30 + TSS region transcription start site region 144830
Polh 17 46171355 to 46202645 31290 - protein coding gene polymerase (DNA directed), eta (RAD 30 related)
Cpgi9218 17 46202031 to 46203608 1577 CpG island CpG island 9218
Tssr148305 17 46202450 to 46202473 23 - TSS region transcription start site region 148305
Tssr148306 17 46202487 to 46202515 28 - TSS region transcription start site region 148306
Tssr148307 17 46202576 to 46202673 97 - TSS region transcription start site region 148307
Tssr144831 17 46202740 to 46202854 114 + TSS region transcription start site region 144831
Xpo5 17 46202855 to 46242299 39444 + protein coding gene exportin 5
Tssr144832 17 46202861 to 46202878 17 + TSS region transcription start site region 144832
Tssr144833 17 46227770 to 46227780 10 + TSS region transcription start site region 144833
Tssr144834 17 46227788 to 46227799 11 + TSS region transcription start site region 144834
Tssr144835 17 46227803 to 46227808 5 + TSS region transcription start site region 144835
Tssr144836 17 46227827 to 46227830 3 + TSS region transcription start site region 144836
Tssr144837 17 46227869 to 46227870 1 + TSS region transcription start site region 144837
Mir693 17 46231531 to 46231619 88 + miRNA gene microRNA 693
Gm22474 17 46232725 to 46232831 106 - snRNA gene predicted gene, 22474
Polr1c 17 46243920 to 46248045 4125 - protein coding gene polymerase (RNA) I polypeptide C
Cpgi9219 17 46247517 to 46248932 1415 CpG island CpG island 9219
Tssr148308 17 46247969 to 46248000 31 - TSS region transcription start site region 148308
Tssr144838 17 46248069 to 46248139 70 + TSS region transcription start site region 144838
Yipf3 17 46248080 to 46252537 4457 + protein coding gene Yip1 domain family, member 3
Tssr144839 17 46248173 to 46248176 3 + TSS region transcription start site region 144839
Tssr144840 17 46248192 to 46248201 9 + TSS region transcription start site region 144840
Cpgi9220 17 46253457 to 46254940 1483 CpG island CpG island 9220
Tssr144841 17 46253917 to 46253978 61 + TSS region transcription start site region 144841
Tssr144842 17 46253981 to 46253986 5 + TSS region transcription start site region 144842
Tssr144843 17 46254017 to 46254022 5 + TSS region transcription start site region 144843
Lrrc73 17 46254165 to 46257316 3151 + protein coding gene leucine rich repeat containing 73
Tjap1 17 46257851 to 46283026 25175 - protein coding gene tight junction associated protein 1