Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:36450008-36892219

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obox3-ps8 17 36452294 to 36453253 959 - pseudogene oocyte specific homeobox 3, pseudogene 8
H2-M10.4 17 36458917 to 36462329 3412 - protein coding gene histocompatibility 2, M region locus 10.4
D17Mit125 17 36498157 to 36498299 142 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 125
Gm20452 17 36500360 to 36501581 1221 + pseudogene predicted gene 20452
Gm18809 17 36501027 to 36534495 33468 + pseudogene predicted gene, 18809
Gm20451 17 36507180 to 36508952 1772 + pseudogene predicted gene 20451
Gm20454 17 36534281 to 36534501 220 + pseudogene predicted gene 20454
Gm20453 17 36545888 to 36546113 225 - pseudogene predicted gene 20453
H2-M11 17 36547075 to 36549250 2175 + protein coding gene histocompatibility 2, M region locus 11
Gm8868 17 36558621 to 36561668 3047 + pseudogene predicted gene 8868
Gm20450 17 36597898 to 36598044 146 + pseudogene predicted gene 20450
D17Dcr35 17 36601074 to 36601169 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 35
H2-M9 17 36640425 to 36642644 2219 - protein coding gene histocompatibility 2, M region locus 9
Tssr147977 17 36642661 to 36642664 3 - TSS region transcription start site region 147977
Rpl9-ps5 17 36657056 to 36657626 570 + pseudogene ribosomal protein L9, pseudogene 5
H2-M1 17 36670008 to 36672219 2211 - protein coding gene histocompatibility 2, M region locus 1
D17Dcr36 17 36697310 to 36697405 95 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 36
Gm8877 17 36701629 to 36703209 1580 - pseudogene predicted gene 8877
Gm20549 17 36703775 to 36704203 428 + pseudogene predicted gene 20549
Gm20523 17 36705724 to 36706847 1123 - pseudogene predicted gene 20523
Gm20525 17 36723234 to 36723281 47 + pseudogene predicted gene 20525
Gm20526 17 36723948 to 36724275 327 + pseudogene predicted gene 20526
Gm4271 17 36732642 to 36734751 2109 + pseudogene predicted gene 4271
Gm20401 17 36752513 to 36753979 1466 - pseudogene predicted gene 20401
Gm8878 17 36759857 to 36761302 1445 - pseudogene predicted gene 8878
H2-M10.5 17 36772910 to 36776234 3324 + protein coding gene histocompatibility 2, M region locus 10.5
H2-M10.6 17 36812175 to 36815566 3391 + protein coding gene histocompatibility 2, M region locus 10.6
Cpgi9143 17 36836873 to 36837556 683 CpG island CpG island 9143
Tssr144511 17 36837123 to 36837211 88 + TSS region transcription start site region 144511
Trim26 17 36837134 to 36859398 22264 + protein coding gene tripartite motif-containing 26
Gm25973 17 36842226 to 36842352 126 - snoRNA gene predicted gene, 25973
Trim15 17 36860691 to 36867210 6519 - protein coding gene tripartite motif-containing 15
Tssr147978 17 36867103 to 36867110 7 - TSS region transcription start site region 147978
Tssr147979 17 36867116 to 36867159 43 - TSS region transcription start site region 147979
Tssr147980 17 36867202 to 36867253 51 - TSS region transcription start site region 147980
Tssr144512 17 36869513 to 36869529 16 + TSS region transcription start site region 144512
Tssr144513 17 36869532 to 36869541 9 + TSS region transcription start site region 144513
Tssr144514 17 36869546 to 36869565 19 + TSS region transcription start site region 144514
Tssr144515 17 36869567 to 36869581 14 + TSS region transcription start site region 144515
Trim10 17 36869574 to 36877833 8259 + protein coding gene tripartite motif-containing 10
Cpgi9144 17 36870042 to 36870289 247 CpG island CpG island 9144
Tssr144516 17 36870102 to 36870142 40 + TSS region transcription start site region 144516
Gm4276 17 36877954 to 36878479 525 + pseudogene predicted gene 4276
Trim40 17 36881598 to 36890123 8525 - protein coding gene tripartite motif-containing 40
Tssr147981 17 36889664 to 36889675 11 - TSS region transcription start site region 147981
Tssr147982 17 36890034 to 36890050 16 - TSS region transcription start site region 147982
Tssr147983 17 36890133 to 36890161 28 - TSS region transcription start site region 147983