Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:35876427-35976433

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dps3 17 33600747 to 35939288 2338541 QTL delta power in slow-wave sleep 3
Cpgi9116 17 35879435 to 35880291 856 CpG island CpG island 9116
Tssr144462 17 35879770 to 35879824 54 + TSS region transcription start site region 144462
Dhx16 17 35879819 to 35892670 12851 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 16
Tssr144463 17 35879825 to 35879845 20 + TSS region transcription start site region 144463
Tssr144464 17 35879895 to 35879909 14 + TSS region transcription start site region 144464
Tssr144465 17 35879953 to 35879962 9 + TSS region transcription start site region 144465
Tssr144466 17 35887872 to 35888023 151 + TSS region transcription start site region 144466
Tssr144467 17 35888125 to 35888139 14 + TSS region transcription start site region 144467
2310061I04Rik 17 35892677 to 35897378 4701 - protein coding gene RIKEN cDNA 2310061I04 gene
Tssr147915 17 35895990 to 35896001 11 - TSS region transcription start site region 147915
Tssr147916 17 35896022 to 35896061 39 - TSS region transcription start site region 147916
Cpgi9117 17 35896676 to 35898046 1370 CpG island CpG island 9117
Tssr147917 17 35897079 to 35897141 62 - TSS region transcription start site region 147917
Tssr147918 17 35897299 to 35897324 25 - TSS region transcription start site region 147918
Tssr147919 17 35897326 to 35897331 5 - TSS region transcription start site region 147919
Tssr147920 17 35897342 to 35897369 27 - TSS region transcription start site region 147920
Tssr147921 17 35897371 to 35897418 47 - TSS region transcription start site region 147921
Atat1 17 35897595 to 35910075 12480 - protein coding gene alpha tubulin acetyltransferase 1
Tssr147922 17 35900721 to 35900740 19 - TSS region transcription start site region 147922
Tssr147923 17 35901435 to 35901452 17 - TSS region transcription start site region 147923
Tssr147924 17 35901543 to 35901569 26 - TSS region transcription start site region 147924
Tssr147925 17 35908907 to 35908924 17 - TSS region transcription start site region 147925
Tssr147926 17 35909224 to 35909246 22 - TSS region transcription start site region 147926
Gm16279 17 35909423 to 35913288 3865 + antisense lncRNA gene predicted gene 16279
Tssr147927 17 35909677 to 35909700 23 - TSS region transcription start site region 147927
Tssr144468 17 35909729 to 35909755 26 + TSS region transcription start site region 144468
Cpgi9118 17 35909789 to 35910176 387 CpG island CpG island 9118
Tssr147928 17 35910000 to 35910029 29 - TSS region transcription start site region 147928
Tssr147929 17 35910032 to 35910076 44 - TSS region transcription start site region 147929
Mrps18b 17 35910379 to 35916389 6010 - protein coding gene mitochondrial ribosomal protein S18B
Tssr144469 17 35915687 to 35915698 11 + TSS region transcription start site region 144469
Cpgi9119 17 35916033 to 35917452 1419 CpG island CpG island 9119
Tssr147930 17 35916340 to 35916411 71 - TSS region transcription start site region 147930
Tssr144470 17 35916428 to 35916479 51 + TSS region transcription start site region 144470
Ppp1r10 17 35916512 to 35932283 15771 + protein coding gene protein phosphatase 1, regulatory subunit 10
Tssr144471 17 35916541 to 35916562 21 + TSS region transcription start site region 144471
Tssr144472 17 35916571 to 35916595 24 + TSS region transcription start site region 144472
Tssr144473 17 35916879 to 35916910 31 + TSS region transcription start site region 144473
Tssr144474 17 35916912 to 35916914 2 + TSS region transcription start site region 144474
Tssr144475 17 35916918 to 35916929 11 + TSS region transcription start site region 144475
Tssr144476 17 35916930 to 35916939 9 + TSS region transcription start site region 144476
Tssr144477 17 35916951 to 35916958 7 + TSS region transcription start site region 144477
Tssr144478 17 35916977 to 35916993 16 + TSS region transcription start site region 144478
Mir1894 17 35917889 to 35917969 80 + miRNA gene microRNA 1894
Tssr144479 17 35919249 to 35919276 27 + TSS region transcription start site region 144479
2810427A07Rik 17 35920324 to 35920959 635 unclassified gene RIKEN cDNA 2810427A07 gene
Tssr144480 17 35926427 to 35926433 6 + TSS region transcription start site region 144480
Rbx1-ps 17 35935624 to 35935950 326 - pseudogene ring-box 1, pseudogene
D17Mit233 17 35939173 to 35939288 115 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 233
D17Dcr7 17 35939179 to 35939285 106 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 7
Tssr144481 17 35947161 to 35947170 9 + TSS region transcription start site region 144481
Gm8801 17 35947246 to 35952297 5051 + pseudogene predicted gene 8801
Abcf1 17 35956819 to 35969761 12942 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 1
Mir877 17 35960730 to 35960814 84 - miRNA gene microRNA 877
Tssr147931 17 35963662 to 35963677 15 - TSS region transcription start site region 147931
Cpgi9120 17 35969252 to 35970080 828 CpG island CpG island 9120
Tssr147932 17 35969528 to 35969569 41 - TSS region transcription start site region 147932
Tssr147933 17 35969697 to 35969711 14 - TSS region transcription start site region 147933
Tssr147934 17 35969724 to 35969785 61 - TSS region transcription start site region 147934
Gm32655 17 35969809 to 35972538 2729 + lncRNA gene predicted gene, 32655
Tssr144482 17 35969885 to 35969966 81 + TSS region transcription start site region 144482
Tssr144483 17 35970056 to 35970068 12 + TSS region transcription start site region 144483
Prr3 17 35972539 to 35980008 7469 - protein coding gene proline-rich polypeptide 3