Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34961985-35042164

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hspa1a 17 34969359 to 34972156 2797 - protein coding gene heat shock protein 1A
Tssr147703 17 34969418 to 34969427 9 - TSS region transcription start site region 147703
Tssr147704 17 34969804 to 34969807 3 - TSS region transcription start site region 147704
Gm20481 17 34969912 to 34972136 2224 + protein coding gene predicted gene 20481
Cpgi9067 17 34970282 to 34970568 286 CpG island CpG island 9067
Cpgi9068 17 34971738 to 34972627 889 CpG island CpG island 9068
Tssr147705 17 34972150 to 34972158 8 - TSS region transcription start site region 147705
Tssr144146 17 34972687 to 34972705 18 + TSS region transcription start site region 144146
Hspa1l 17 34972703 to 34979228 6525 + protein coding gene heat shock protein 1-like
Tssr144147 17 34972708 to 34972729 21 + TSS region transcription start site region 144147
D17Nki3 17 34976054 to 34976182 128 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 3
D17Nki4 17 34976408 to 34976486 78 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 4
Gm10501 17 34976899 to 34981788 4889 - antisense lncRNA gene predicted gene 10501
Cpgi9069 17 34976932 to 34978678 1746 CpG island CpG island 9069
Cpgi9070 17 34981604 to 34982593 989 CpG island CpG island 9070
Tssr147706 17 34981760 to 34981829 69 - TSS region transcription start site region 147706
Tssr144148 17 34981847 to 34981897 50 + TSS region transcription start site region 144148
Lsm2 17 34981862 to 34985891 4029 + protein coding gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
Tssr144149 17 34981898 to 34981940 42 + TSS region transcription start site region 144149
Tssr144150 17 34981947 to 34981948 1 + TSS region transcription start site region 144150
Tssr144151 17 34981952 to 34981986 34 + TSS region transcription start site region 144151
Tssr144152 17 34982022 to 34982034 12 + TSS region transcription start site region 144152
Tssr144153 17 34982099 to 34982151 52 + TSS region transcription start site region 144153
Tssr144154 17 34982154 to 34982168 14 + TSS region transcription start site region 144154
Tssr147707 17 34982477 to 34982491 14 - TSS region transcription start site region 147707
Tssr144155 17 34982586 to 34982652 66 + TSS region transcription start site region 144155
Tssr144156 17 34985533 to 34985567 34 + TSS region transcription start site region 144156
Igis1 17 34996678 to 35026741 30063 heritable phenotypic marker immunoglobulin isotype 1
D17H6S56E-5 17 34996678 to 35000746 4068 - protein coding gene DNA segment, Chr 17, human D6S56E 5
Tssr147708 17 34998678 to 34998718 40 - TSS region transcription start site region 147708
Tssr144157 17 34998743 to 34998756 13 + TSS region transcription start site region 144157
Tssr147709 17 34999234 to 34999255 21 - TSS region transcription start site region 147709
Tssr147710 17 34999309 to 34999341 32 - TSS region transcription start site region 147710
Tssr147711 17 34999436 to 34999449 13 - TSS region transcription start site region 147711
Cpgi9071 17 34999973 to 35000176 203 CpG island CpG island 9071
Tssr147712 17 35000027 to 35000037 10 - TSS region transcription start site region 147712
Tssr147713 17 35000368 to 35000411 43 - TSS region transcription start site region 147713
Cpgi9072 17 35000729 to 35001848 1119 CpG island CpG island 9072
Tssr147714 17 35000777 to 35000801 24 - TSS region transcription start site region 147714
Tssr147715 17 35000808 to 35000836 28 - TSS region transcription start site region 147715
Tssr147716 17 35000848 to 35000857 9 - TSS region transcription start site region 147716
Tssr144158 17 35000902 to 35000930 28 + TSS region transcription start site region 144158
Tssr144159 17 35000933 to 35000944 11 + TSS region transcription start site region 144159
Tssr144160 17 35000946 to 35000962 16 + TSS region transcription start site region 144160
Tssr144161 17 35000965 to 35000976 11 + TSS region transcription start site region 144161
Vars 17 35000987 to 35016322 15335 + protein coding gene valyl-tRNA synthetase
Tssr144162 17 35001023 to 35001097 74 + TSS region transcription start site region 144162
Tssr144163 17 35001098 to 35001161 63 + TSS region transcription start site region 144163
Tssr144164 17 35001282 to 35001347 65 + TSS region transcription start site region 144164
Tssr144165 17 35001349 to 35001371 22 + TSS region transcription start site region 144165
Tssr144166 17 35001380 to 35001423 43 + TSS region transcription start site region 144166
Tssr144167 17 35001568 to 35001582 14 + TSS region transcription start site region 144167
Tssr147717 17 35001942 to 35001960 18 - TSS region transcription start site region 147717
D17Nki5 17 35001985 to 35002164 179 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 5
Tssr147718 17 35002578 to 35002590 12 - TSS region transcription start site region 147718
D17Nki6 17 35003051 to 35003228 177 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 6
Tssr144168 17 35004681 to 35004690 9 + TSS region transcription start site region 144168
Tssr144169 17 35004695 to 35004728 33 + TSS region transcription start site region 144169
Tssr144170 17 35016518 to 35016546 28 + TSS region transcription start site region 144170
Tssr144171 17 35016576 to 35016604 28 + TSS region transcription start site region 144171
Vwa7 17 35016579 to 35026741 10162 + protein coding gene von Willebrand factor A domain containing 7
Tssr144172 17 35024107 to 35024113 6 + TSS region transcription start site region 144172
Tssr144173 17 35024136 to 35024145 9 + TSS region transcription start site region 144173
Tssr144174 17 35024362 to 35024376 14 + TSS region transcription start site region 144174
Sapcd1 17 35025959 to 35028016 2057 - protein coding gene suppressor APC domain containing 1
Tssr144175 17 35027537 to 35027547 10 + TSS region transcription start site region 144175
Tssr147719 17 35027634 to 35027647 13 - TSS region transcription start site region 147719
Tssr147720 17 35027648 to 35027657 9 - TSS region transcription start site region 147720
Tssr147721 17 35027665 to 35027673 8 - TSS region transcription start site region 147721
Tssr147722 17 35027856 to 35027868 12 - TSS region transcription start site region 147722
Tssr147723 17 35027878 to 35027895 17 - TSS region transcription start site region 147723
Tssr147724 17 35027909 to 35027934 25 - TSS region transcription start site region 147724
Msh5 17 35028605 to 35046745 18140 - protein coding gene mutS homolog 5
Tssr147725 17 35029840 to 35029870 30 - TSS region transcription start site region 147725
Tssr147726 17 35029877 to 35029889 12 - TSS region transcription start site region 147726