Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:34866288-35036292

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sles1 17 34000916 to 34956961 956045 QTL systemic lupus erythmatosus suppressor 1
Gm20547 17 34856412 to 34882042 25630 - protein coding gene predicted gene 20547
C2 17 34862602 to 34882100 19498 - protein coding gene complement component 2 (within H-2S)
Tssr147691 17 34882004 to 34882080 76 - TSS region transcription start site region 147691
Tssr147692 17 34882094 to 34882114 20 - TSS region transcription start site region 147692
Gm40706 17 34892804 to 34895216 2412 - lncRNA gene predicted gene, 40706
Cpgi9059 17 34893880 to 34895633 1753 CpG island CpG island 9059
Tssr144124 17 34894515 to 34894573 58 + TSS region transcription start site region 144124
Zbtb12 17 34894559 to 34897064 2505 + protein coding gene zinc finger and BTB domain containing 12
Tssr144125 17 34894579 to 34894594 15 + TSS region transcription start site region 144125
Tssr144126 17 34894644 to 34894685 41 + TSS region transcription start site region 144126
Tssr144127 17 34894686 to 34894700 14 + TSS region transcription start site region 144127
Tssr147693 17 34895983 to 34895996 13 - TSS region transcription start site region 147693
Tssr144128 17 34896958 to 34896977 19 + TSS region transcription start site region 144128
Cpgi9060 17 34898079 to 34899759 1680 CpG island CpG island 9060
Tssr144129 17 34898276 to 34898315 39 + TSS region transcription start site region 144129
Tssr144130 17 34898463 to 34898501 38 + TSS region transcription start site region 144130
Ehmt2 17 34898469 to 34914052 15583 + protein coding gene euchromatic histone lysine N-methyltransferase 2
Tssr144131 17 34898586 to 34898605 19 + TSS region transcription start site region 144131
Tssr144132 17 34898931 to 34898986 55 + TSS region transcription start site region 144132
Tssr144133 17 34903169 to 34903180 11 + TSS region transcription start site region 144133
Tssr144134 17 34903341 to 34903354 13 + TSS region transcription start site region 144134
Tssr144135 17 34911201 to 34911227 26 + TSS region transcription start site region 144135
Tssr144136 17 34911243 to 34911257 14 + TSS region transcription start site region 144136
Tssr144137 17 34914245 to 34914276 31 + TSS region transcription start site region 144137
Tssr144138 17 34914432 to 34914446 14 + TSS region transcription start site region 144138
Tssr144139 17 34914459 to 34914476 17 + TSS region transcription start site region 144139
Slc44a4 17 34914466 to 34930436 15970 + protein coding gene solute carrier family 44, member 4
Cpgi9061 17 34931045 to 34932152 1107 CpG island CpG island 9061
Neu1 17 34931253 to 34935953 4700 + protein coding gene neuraminidase 1
Tssr144140 17 34931331 to 34931343 12 + TSS region transcription start site region 144140
Tssr144141 17 34931348 to 34931384 36 + TSS region transcription start site region 144141
Tssr144142 17 34931904 to 34931937 33 + TSS region transcription start site region 144142
Cpgi9062 17 34934009 to 34934922 913 CpG island CpG island 9062
Tssr144143 17 34934059 to 34934079 20 + TSS region transcription start site region 144143
D17Nki1 17 34946744 to 34947028 284 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 1
D17Nki2 17 34947008 to 34947219 211 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 2
1110038B12Rik 17 34950238 to 34952471 2233 - lncRNA gene RIKEN cDNA 1110038B12 gene
Snord52 17 34950950 to 34951008 58 - snoRNA gene small nucleolar RNA, C/D box 52
Tssr147694 17 34951288 to 34951292 4 - TSS region transcription start site region 147694
Cpgi9063 17 34951888 to 34952619 731 CpG island CpG island 9063
Tssr147695 17 34951897 to 34951929 32 - TSS region transcription start site region 147695
Gm25744 17 34952013 to 34952075 62 - snoRNA gene predicted gene, 25744
Tssr147696 17 34952459 to 34952475 16 - TSS region transcription start site region 147696
Gm8696 17 34954328 to 34954712 384 - pseudogene predicted gene 8696
Tssr144144 17 34956432 to 34956436 4 + TSS region transcription start site region 144144
Hspa1b 17 34956436 to 34959238 2802 - protein coding gene heat shock protein 1B
Ssial4 17 34956436 to 34959238 2802 QTL susceptibility to sialadenitis 4
D17Mit1011 17 34956656 to 34956838 182 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1011
Tssr147697 17 34956671 to 34956686 15 - TSS region transcription start site region 147697
Tssr147698 17 34956819 to 34956828 9 - TSS region transcription start site region 147698
D17Mit83 17 34956841 to 34956961 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 83
Mbis4 17 34956841 to 69858931 34902090 QTL Mycobacterium bovis-induced systemic lupus erythematosus 4
D17Nds2 17 34956842 to 34956943 101 DNA segment DNA segment, Chr 17, Nuffield Department of Surgery 2
D17Mit83.1 17 34956990 to 34957099 109 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 83.1
Cpgi9064 17 34957043 to 34957658 615 CpG island CpG island 9064
Tssr147699 17 34957123 to 34957147 24 - TSS region transcription start site region 147699
7330403C04Rik 17 34957618 to 34959818 2200 unclassified non-coding RNA gene RIKEN cDNA 7330403C04 gene
Cpgi9065 17 34958073 to 34958226 153 CpG island CpG island 9065
Cpgi9066 17 34958818 to 34959660 842 CpG island CpG island 9066
Tssr147700 17 34959113 to 34959150 37 - TSS region transcription start site region 147700
Tssr147701 17 34959232 to 34959238 6 - TSS region transcription start site region 147701
Tssr144145 17 34959574 to 34959579 5 + TSS region transcription start site region 144145
Tssr147702 17 34959584 to 34959592 8 - TSS region transcription start site region 147702
Hspa1a 17 34969359 to 34972156 2797 - protein coding gene heat shock protein 1A
Tssr147703 17 34969418 to 34969427 9 - TSS region transcription start site region 147703
Tssr147704 17 34969804 to 34969807 3 - TSS region transcription start site region 147704
Gm20481 17 34969912 to 34972136 2224 + protein coding gene predicted gene 20481
Cpgi9067 17 34970282 to 34970568 286 CpG island CpG island 9067
Cpgi9068 17 34971738 to 34972627 889 CpG island CpG island 9068
Tssr147705 17 34972150 to 34972158 8 - TSS region transcription start site region 147705
Tssr144146 17 34972687 to 34972705 18 + TSS region transcription start site region 144146
Hspa1l 17 34972703 to 34979228 6525 + protein coding gene heat shock protein 1-like
Tssr144147 17 34972708 to 34972729 21 + TSS region transcription start site region 144147
D17Nki3 17 34976054 to 34976182 128 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 3
D17Nki4 17 34976408 to 34976486 78 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 4
Gm10501 17 34976899 to 34981788 4889 - antisense lncRNA gene predicted gene 10501
Cpgi9069 17 34976932 to 34978678 1746 CpG island CpG island 9069
Cpgi9070 17 34981604 to 34982593 989 CpG island CpG island 9070
Tssr147706 17 34981760 to 34981829 69 - TSS region transcription start site region 147706
Tssr144148 17 34981847 to 34981897 50 + TSS region transcription start site region 144148
Lsm2 17 34981862 to 34985891 4029 + protein coding gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
Tssr144149 17 34981898 to 34981940 42 + TSS region transcription start site region 144149
Tssr144150 17 34981947 to 34981948 1 + TSS region transcription start site region 144150
Tssr144151 17 34981952 to 34981986 34 + TSS region transcription start site region 144151
Tssr144152 17 34982022 to 34982034 12 + TSS region transcription start site region 144152
Tssr144153 17 34982099 to 34982151 52 + TSS region transcription start site region 144153
Tssr144154 17 34982154 to 34982168 14 + TSS region transcription start site region 144154
Tssr147707 17 34982477 to 34982491 14 - TSS region transcription start site region 147707
Tssr144155 17 34982586 to 34982652 66 + TSS region transcription start site region 144155
Tssr144156 17 34985533 to 34985567 34 + TSS region transcription start site region 144156
Igis1 17 34996678 to 35026741 30063 heritable phenotypic marker immunoglobulin isotype 1
D17H6S56E-5 17 34996678 to 35000746 4068 - protein coding gene DNA segment, Chr 17, human D6S56E 5
Tssr147708 17 34998678 to 34998718 40 - TSS region transcription start site region 147708
Tssr144157 17 34998743 to 34998756 13 + TSS region transcription start site region 144157
Tssr147709 17 34999234 to 34999255 21 - TSS region transcription start site region 147709
Tssr147710 17 34999309 to 34999341 32 - TSS region transcription start site region 147710
Tssr147711 17 34999436 to 34999449 13 - TSS region transcription start site region 147711
Cpgi9071 17 34999973 to 35000176 203 CpG island CpG island 9071
Tssr147712 17 35000027 to 35000037 10 - TSS region transcription start site region 147712
Tssr147713 17 35000368 to 35000411 43 - TSS region transcription start site region 147713
Cpgi9072 17 35000729 to 35001848 1119 CpG island CpG island 9072
Tssr147714 17 35000777 to 35000801 24 - TSS region transcription start site region 147714
Tssr147715 17 35000808 to 35000836 28 - TSS region transcription start site region 147715
Tssr147716 17 35000848 to 35000857 9 - TSS region transcription start site region 147716
Tssr144158 17 35000902 to 35000930 28 + TSS region transcription start site region 144158
Tssr144159 17 35000933 to 35000944 11 + TSS region transcription start site region 144159
Tssr144160 17 35000946 to 35000962 16 + TSS region transcription start site region 144160
Tssr144161 17 35000965 to 35000976 11 + TSS region transcription start site region 144161
Vars 17 35000987 to 35016322 15335 + protein coding gene valyl-tRNA synthetase
Tssr144162 17 35001023 to 35001097 74 + TSS region transcription start site region 144162
Tssr144163 17 35001098 to 35001161 63 + TSS region transcription start site region 144163
Tssr144164 17 35001282 to 35001347 65 + TSS region transcription start site region 144164
Tssr144165 17 35001349 to 35001371 22 + TSS region transcription start site region 144165
Tssr144166 17 35001380 to 35001423 43 + TSS region transcription start site region 144166
Tssr144167 17 35001568 to 35001582 14 + TSS region transcription start site region 144167
Tssr147717 17 35001942 to 35001960 18 - TSS region transcription start site region 147717
D17Nki5 17 35001985 to 35002164 179 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 5
Tssr147718 17 35002578 to 35002590 12 - TSS region transcription start site region 147718
D17Nki6 17 35003051 to 35003228 177 DNA segment DNA segment, Chr 17, Netherlands Cancer Institute 6
Tssr144168 17 35004681 to 35004690 9 + TSS region transcription start site region 144168
Tssr144169 17 35004695 to 35004728 33 + TSS region transcription start site region 144169
Tssr144170 17 35016518 to 35016546 28 + TSS region transcription start site region 144170
Tssr144171 17 35016576 to 35016604 28 + TSS region transcription start site region 144171
Vwa7 17 35016579 to 35026741 10162 + protein coding gene von Willebrand factor A domain containing 7
Tssr144172 17 35024107 to 35024113 6 + TSS region transcription start site region 144172
Tssr144173 17 35024136 to 35024145 9 + TSS region transcription start site region 144173
Tssr144174 17 35024362 to 35024376 14 + TSS region transcription start site region 144174
Sapcd1 17 35025959 to 35028016 2057 - protein coding gene suppressor APC domain containing 1
Tssr144175 17 35027537 to 35027547 10 + TSS region transcription start site region 144175
Tssr147719 17 35027634 to 35027647 13 - TSS region transcription start site region 147719
Tssr147720 17 35027648 to 35027657 9 - TSS region transcription start site region 147720
Tssr147721 17 35027665 to 35027673 8 - TSS region transcription start site region 147721
Tssr147722 17 35027856 to 35027868 12 - TSS region transcription start site region 147722
Tssr147723 17 35027878 to 35027895 17 - TSS region transcription start site region 147723
Tssr147724 17 35027909 to 35027934 25 - TSS region transcription start site region 147724
Msh5 17 35028605 to 35046745 18140 - protein coding gene mutS homolog 5
Tssr147725 17 35029840 to 35029870 30 - TSS region transcription start site region 147725
Tssr147726 17 35029877 to 35029889 12 - TSS region transcription start site region 147726