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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:31181218-31591238

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmprss3 17 31179272 to 31198975 19703 - protein coding gene transmembrane protease, serine 3
Tssr5079 17 31186221 to 31186258 37 - TSS region transcription start site region 5079
Tssr5080 17 31186620 to 31186656 36 - TSS region transcription start site region 5080
Tssr5081 17 31198906 to 31198912 6 - TSS region transcription start site region 5081
Tssr147274 17 31198924 to 31198954 30 - TSS region transcription start site region 147274
Tssr147275 17 31198958 to 31198976 18 - TSS region transcription start site region 147275
Tssr147276 17 31199008 to 31199012 4 - TSS region transcription start site region 147276
Ubash3a 17 31207873 to 31242202 34329 + protein coding gene ubiquitin associated and SH3 domain containing, A
Tssr143654 17 31208049 to 31208112 63 + TSS region transcription start site region 143654
Tssr147277 17 31208797 to 31208805 8 - TSS region transcription start site region 147277
Tssr147278 17 31208813 to 31208835 22 - TSS region transcription start site region 147278
Tssr143655 17 31212106 to 31212121 15 + TSS region transcription start site region 143655
Tssr143656 17 31247323 to 31247334 11 + TSS region transcription start site region 143656
Rsph1 17 31255019 to 31277356 22337 - protein coding gene radial spoke head 1 homolog (Chlamydomonas)
Gm30090 17 31258196 to 31259681 1485 + lncRNA gene predicted gene, 30090
Tssr147279 17 31260508 to 31260512 4 - TSS region transcription start site region 147279
Tssr147280 17 31265868 to 31265878 10 - TSS region transcription start site region 147280
Tssr147281 17 31268354 to 31268358 4 - TSS region transcription start site region 147281
Cpgi8942 17 31276927 to 31277545 618 CpG island CpG island 8942
Tssr147282 17 31277257 to 31277325 68 - TSS region transcription start site region 147282
Tssr147283 17 31277327 to 31277352 25 - TSS region transcription start site region 147283
Tssr5082 17 31277378 to 31277382 4 - TSS region transcription start site region 5082
Tssr147284 17 31277389 to 31277404 15 - TSS region transcription start site region 147284
Gm8437 17 31278503 to 31299821 21318 unclassified gene predicted gene 8437
Gm30139 17 31285484 to 31292441 6957 - lncRNA gene predicted gene, 30139
Slc37a1 17 31295483 to 31350696 55213 + protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 1
Cpgi8943 17 31295770 to 31296893 1123 CpG island CpG island 8943
Tssr5083 17 31295806 to 31295819 13 + TSS region transcription start site region 5083
Tssr143657 17 31296191 to 31296253 62 + TSS region transcription start site region 143657
Tssr147285 17 31296623 to 31296646 23 - TSS region transcription start site region 147285
Tssr147286 17 31296650 to 31296666 16 - TSS region transcription start site region 147286
Tssr143658 17 31296722 to 31296794 72 + TSS region transcription start site region 143658
Tssr143659 17 31296796 to 31296816 20 + TSS region transcription start site region 143659
Tssr143660 17 31296986 to 31296999 13 + TSS region transcription start site region 143660
Tssr143661 17 31319857 to 31319882 25 + TSS region transcription start site region 143661
D17Mit146.1 17 31320504 to 31320668 164 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146.1
D17Mit146 17 31320646 to 31320751 105 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 146
Tssr143662 17 31322140 to 31322153 13 + TSS region transcription start site region 143662
Cpgi8944 17 31385959 to 31386777 818 CpG island CpG island 8944
Tssr143663 17 31386218 to 31386238 20 + TSS region transcription start site region 143663
Pde9a 17 31386234 to 31476310 90076 + protein coding gene phosphodiesterase 9A
Tssr143664 17 31386244 to 31386280 36 + TSS region transcription start site region 143664
Gm9902 17 31432999 to 31434831 1832 unclassified gene predicted gene 9902
Tssr143665 17 31433054 to 31433063 9 + TSS region transcription start site region 143665
Tssr143666 17 31433099 to 31433156 57 + TSS region transcription start site region 143666
Tssr143667 17 31442914 to 31442928 14 + TSS region transcription start site region 143667
Tssr143668 17 31442938 to 31442953 15 + TSS region transcription start site region 143668
Tssr143669 17 31471042 to 31471047 5 + TSS region transcription start site region 143669
D17Mit191 17 31492136 to 31492230 94 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 191
Wdr4 17 31494323 to 31519974 25651 - protein coding gene WD repeat domain 4
Cpgi8945 17 31511710 to 31512733 1023 CpG island CpG island 8945
Tssr147287 17 31512217 to 31512233 16 - TSS region transcription start site region 147287
Tssr147288 17 31512253 to 31512324 71 - TSS region transcription start site region 147288
Cpgi8946 17 31519867 to 31520352 485 CpG island CpG island 8946
Tssr147289 17 31519916 to 31519980 64 - TSS region transcription start site region 147289
Ndufv3 17 31520115 to 31531326 11211 + protein coding gene NADH:ubiquinone oxidoreductase core subunit V3
Tssr143670 17 31520133 to 31520169 36 + TSS region transcription start site region 143670
Tssr143671 17 31520170 to 31520211 41 + TSS region transcription start site region 143671
Gm38099 17 31532291 to 31535460 3169 - unclassified gene predicted gene, 38099
4833413E03Rik 17 31557126 to 31559113 1987 + lincRNA gene RIKEN cDNA 4833413E03 gene
Tssr5084 17 31558007 to 31558014 7 - TSS region transcription start site region 5084
Tssr147290 17 31558029 to 31558066 37 - TSS region transcription start site region 147290
Tssr147291 17 31558067 to 31558082 15 - TSS region transcription start site region 147291
Tssr147292 17 31559560 to 31559575 15 - TSS region transcription start site region 147292
Cpgi8947 17 31563972 to 31565976 2004 CpG island CpG island 8947
Pknox1 17 31564749 to 31607684 42935 + protein coding gene Pbx/knotted 1 homeobox
Tssr143672 17 31564749 to 31564854 105 + TSS region transcription start site region 143672
Tssr143673 17 31564855 to 31564873 18 + TSS region transcription start site region 143673
Tssr143674 17 31564948 to 31564963 15 + TSS region transcription start site region 143674
Gm24970 17 31564962 to 31565043 81 - miRNA gene predicted gene, 24970
Tssr147293 17 31565681 to 31565691 10 - TSS region transcription start site region 147293
Tssr143675 17 31585881 to 31585912 31 + TSS region transcription start site region 143675
Tssr143676 17 31586370 to 31586374 4 + TSS region transcription start site region 143676