Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28961293-29082402

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kctd20 17 28952448 to 28969549 17101 + protein coding gene potassium channel tetramerisation domain containing 20
Stk38 17 28970880 to 29007995 37115 - protein coding gene serine/threonine kinase 38
Tssr143489 17 28970882 to 28970890 8 + TSS region transcription start site region 143489
Tssr147162 17 28981301 to 28981345 44 - TSS region transcription start site region 147162
Gm23887 17 28989977 to 28990148 171 - snRNA gene predicted gene, 23887
Cpgi8905 17 29007112 to 29008269 1157 CpG island CpG island 8905
Tssr147163 17 29007805 to 29007830 25 - TSS region transcription start site region 147163
Tssr147164 17 29007833 to 29007856 23 - TSS region transcription start site region 147164
Tssr147165 17 29007861 to 29007872 11 - TSS region transcription start site region 147165
Tssr147166 17 29007925 to 29007962 37 - TSS region transcription start site region 147166
Tssr147167 17 29007991 to 29008002 11 - TSS region transcription start site region 147167
Tssr5059 17 29008098 to 29008128 30 - TSS region transcription start site region 5059
Gm16196 17 29014642 to 29032568 17926 - bidirectional promoter lncRNA gene predicted gene 16196
Gm16195 17 29021293 to 29022402 1109 + lincRNA gene predicted gene 16195
Cpgi8906 17 29031814 to 29033024 1210 CpG island CpG island 8906
Tssr147168 17 29032396 to 29032412 16 - TSS region transcription start site region 147168
Srsf3 17 29032660 to 29043372 10712 + protein coding gene serine/arginine-rich splicing factor 3
Tssr143490 17 29032664 to 29032681 17 + TSS region transcription start site region 143490
Tssr143491 17 29040991 to 29041002 11 + TSS region transcription start site region 143491
Tssr143492 17 29047215 to 29047218 3 + TSS region transcription start site region 143492
Tssr147169 17 29052029 to 29052057 28 - TSS region transcription start site region 147169
Gm41556 17 29055539 to 29059553 4014 + lincRNA gene predicted gene, 41556
Tssr147170 17 29056739 to 29056743 4 - TSS region transcription start site region 147170
Trp53cor1 17 29057474 to 29079126 21652 - lincRNA gene tumor protein p53 pathway corepressor 1
Gm27599 17 29059744 to 29059917 173 + unclassified non-coding RNA gene predicted gene, 27599
Tssr147171 17 29078832 to 29078841 9 - TSS region transcription start site region 147171
Tssr147172 17 29078926 to 29078944 18 - TSS region transcription start site region 147172
Tssr147173 17 29078953 to 29078972 19 - TSS region transcription start site region 147173
Tssr147174 17 29078982 to 29078994 12 - TSS region transcription start site region 147174
Tssr147175 17 29079023 to 29079041 18 - TSS region transcription start site region 147175
Tssr147176 17 29079060 to 29079075 15 - TSS region transcription start site region 147176
Tssr147177 17 29079094 to 29079133 39 - TSS region transcription start site region 147177
Tssr147178 17 29080822 to 29080856 34 - TSS region transcription start site region 147178
Tssr143493 17 29081576 to 29081587 11 + TSS region transcription start site region 143493