Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:28480008-28560250

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fkbp5 17 28398753 to 28486149 87396 - protein coding gene FK506 binding protein 5
Tssr147123 17 28484869 to 28484872 3 - TSS region transcription start site region 147123
Cpgi8887 17 28484898 to 28486718 1820 CpG island CpG island 8887
Tssr147124 17 28486082 to 28486099 17 - TSS region transcription start site region 147124
Tssr147125 17 28486108 to 28486149 41 - TSS region transcription start site region 147125
Tssr143433 17 28505740 to 28505752 12 + TSS region transcription start site region 143433
Tssr147126 17 28507398 to 28507449 51 - TSS region transcription start site region 147126
Tssr147127 17 28507474 to 28507489 15 - TSS region transcription start site region 147127
Tssr147128 17 28507514 to 28507529 15 - TSS region transcription start site region 147128
Tssr147129 17 28507536 to 28507557 21 - TSS region transcription start site region 147129
Tssr147130 17 28510041 to 28510050 9 - TSS region transcription start site region 147130
Tssr147131 17 28512029 to 28512033 4 - TSS region transcription start site region 147131
Tssr5055 17 28513971 to 28514009 38 + TSS region transcription start site region 5055
Tssr147132 17 28515533 to 28515538 5 - TSS region transcription start site region 147132
Tssr147133 17 28517491 to 28517504 13 - TSS region transcription start site region 147133
Tssr147134 17 28517509 to 28517558 49 - TSS region transcription start site region 147134
Cpgi8888 17 28517729 to 28518553 824 CpG island CpG island 8888
Gm49861 17 28520008 to 28520250 242 + pseudogene predicted gene, 49861
Gm20109 17 28522381 to 28523148 767 - lincRNA gene predicted gene, 20109
Cpgi8889 17 28522585 to 28523845 1260 CpG island CpG island 8889
E230001N04Rik 17 28522720 to 28525398 2678 + lincRNA gene RIKEN cDNA E230001N04 gene
Tssr143434 17 28522722 to 28522761 39 + TSS region transcription start site region 143434
Tssr143435 17 28523275 to 28523314 39 + TSS region transcription start site region 143435
Tssr143436 17 28523318 to 28523327 9 + TSS region transcription start site region 143436
Gm25195 17 28526332 to 28526457 125 + miRNA gene predicted gene, 25195
Gm41506 17 28528743 to 28530734 1991 - bidirectional promoter lncRNA gene predicted gene, 41506
Tssr143437 17 28530828 to 28530833 5 + TSS region transcription start site region 143437
Tssr143438 17 28530834 to 28530879 45 + TSS region transcription start site region 143438
Armc12 17 28530861 to 28538975 8114 + protein coding gene armadillo repeat containing 12
Tssr143439 17 28532171 to 28532201 30 + TSS region transcription start site region 143439
Cpgi8890 17 28533479 to 28533671 192 CpG island CpG island 8890
D17Mit166 17 28536830 to 28536937 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 166
Cpgi8891 17 28538631 to 28538982 351 CpG island CpG island 8891
Tssr143440 17 28549471 to 28549482 11 + TSS region transcription start site region 143440
Tssr143441 17 28549486 to 28549502 16 + TSS region transcription start site region 143441
Clpsl2 17 28549487 to 28552618 3131 + protein coding gene colipase-like 2
Tssr147135 17 28552530 to 28552533 3 - TSS region transcription start site region 147135
Clps 17 28558210 to 28560766 2556 - protein coding gene colipase, pancreatic
Tssr143442 17 28558212 to 28558219 7 + TSS region transcription start site region 143442
Tssr5056 17 28558233 to 28558238 5 - TSS region transcription start site region 5056
Tssr147136 17 28558262 to 28558324 62 - TSS region transcription start site region 147136
Tssr143443 17 28558264 to 28558279 15 + TSS region transcription start site region 143443
Tssr143444 17 28558286 to 28558326 40 + TSS region transcription start site region 143444
Tssr147137 17 28558329 to 28558393 64 - TSS region transcription start site region 147137
Tssr143445 17 28558339 to 28558359 20 + TSS region transcription start site region 143445
Tssr147138 17 28558420 to 28558452 32 - TSS region transcription start site region 147138
Mir6969 17 28558441 to 28558501 60 - miRNA gene microRNA 6969
Tssr143446 17 28558760 to 28558793 33 + TSS region transcription start site region 143446
Tssr147139 17 28558798 to 28558881 83 - TSS region transcription start site region 147139
Tssr143447 17 28558811 to 28558825 14 + TSS region transcription start site region 143447
Tssr147140 17 28558885 to 28558892 7 - TSS region transcription start site region 147140