Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27525220-27951492

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(17D17Jcs40-D17Mit198)7Jcs 17 24928286 to 27659245 2730959 chromosomal deletion deletion, Chr 17, John C Schimenti 7
Tssr143322 17 27529989 to 27529994 5 + TSS region transcription start site region 143322
Gm9703 17 27530067 to 27530412 345 + pseudogene predicted gene 9703
Tssr5053 17 27534943 to 27534944 1 + TSS region transcription start site region 5053
Gm49774 17 27545707 to 27556518 10811 - antisense lncRNA gene predicted gene, 49774
Tssr147042 17 27547330 to 27547337 7 - TSS region transcription start site region 147042
Tssr147043 17 27547346 to 27547357 11 - TSS region transcription start site region 147043
Gm49773 17 27552972 to 27553323 351 + unclassified gene predicted gene, 49773
Tssr143323 17 27554580 to 27554626 46 + TSS region transcription start site region 143323
Cpgi8844 17 27554960 to 27558053 3093 CpG island CpG island 8844
Tssr143324 17 27555519 to 27555528 9 + TSS region transcription start site region 143324
Tssr143325 17 27555558 to 27555603 45 + TSS region transcription start site region 143325
Tssr143326 17 27555635 to 27555646 11 + TSS region transcription start site region 143326
Tssr143327 17 27555816 to 27555834 18 + TSS region transcription start site region 143327
Tssr143328 17 27555851 to 27555865 14 + TSS region transcription start site region 143328
Tssr147044 17 27556505 to 27556511 6 - TSS region transcription start site region 147044
Hmga1 17 27556574 to 27563672 7098 + protein coding gene high mobility group AT-hook 1
Tssr143329 17 27556580 to 27556593 13 + TSS region transcription start site region 143329
Tssr143330 17 27556601 to 27556612 11 + TSS region transcription start site region 143330
Tssr143331 17 27556613 to 27556635 22 + TSS region transcription start site region 143331
Tssr143332 17 27556643 to 27556652 9 + TSS region transcription start site region 143332
Tssr143333 17 27556677 to 27556690 13 + TSS region transcription start site region 143333
Tssr143334 17 27556706 to 27556717 11 + TSS region transcription start site region 143334
Tssr143335 17 27556761 to 27556779 18 + TSS region transcription start site region 143335
Tssr143336 17 27556801 to 27556814 13 + TSS region transcription start site region 143336
Tssr143337 17 27556843 to 27556858 15 + TSS region transcription start site region 143337
Tssr143338 17 27556873 to 27556885 12 + TSS region transcription start site region 143338
Tssr143339 17 27556920 to 27556932 12 + TSS region transcription start site region 143339
Tssr143340 17 27556942 to 27556963 21 + TSS region transcription start site region 143340
Tssr143341 17 27556977 to 27556989 12 + TSS region transcription start site region 143341
Tssr143342 17 27557461 to 27557507 46 + TSS region transcription start site region 143342
Tssr143343 17 27557898 to 27557915 17 + TSS region transcription start site region 143343
Tssr143344 17 27561306 to 27561315 9 + TSS region transcription start site region 143344
Tssr143345 17 27561340 to 27561347 7 + TSS region transcription start site region 143345
Tssr143346 17 27561352 to 27561359 7 + TSS region transcription start site region 143346
Tssr143347 17 27561363 to 27561377 14 + TSS region transcription start site region 143347
AI413582 17 27563769 to 27565736 1967 - protein coding gene expressed sequence AI413582
Cpgi8845 17 27565056 to 27566202 1146 CpG island CpG island 8845
C130040N14Rik 17 27565117 to 27566225 1108 + antisense lncRNA gene RIKEN cDNA C130040N14 gene
Tssr147045 17 27565678 to 27565757 79 - TSS region transcription start site region 147045
Nudt3 17 27579382 to 27623452 44070 - protein coding gene nudix (nucleotide diphosphate linked moiety X)-type motif 3
Tssr147046 17 27580216 to 27580219 3 - TSS region transcription start site region 147046
Tssr147047 17 27580423 to 27580425 2 - TSS region transcription start site region 147047
Tssr147048 17 27580608 to 27580620 12 - TSS region transcription start site region 147048
Gm49804 17 27580780 to 27635222 54442 - protein coding gene predicted gene, 49804
Tssr147049 17 27596813 to 27596850 37 - TSS region transcription start site region 147049
Tssr147050 17 27596911 to 27596919 8 - TSS region transcription start site region 147050
Tssr147051 17 27597176 to 27597196 20 - TSS region transcription start site region 147051
Tssr147052 17 27597197 to 27597226 29 - TSS region transcription start site region 147052
Tssr143348 17 27622256 to 27622267 11 + TSS region transcription start site region 143348
Cpgi8846 17 27622583 to 27623942 1359 CpG island CpG island 8846
Tssr147053 17 27622785 to 27622854 69 - TSS region transcription start site region 147053
Tssr147054 17 27623336 to 27623345 9 - TSS region transcription start site region 147054
Tssr147055 17 27623379 to 27623390 11 - TSS region transcription start site region 147055
Tssr147056 17 27623391 to 27623416 25 - TSS region transcription start site region 147056
Tssr147057 17 27623441 to 27623495 54 - TSS region transcription start site region 147057
Gm49741 17 27623497 to 27624265 768 + bidirectional promoter lncRNA gene predicted gene, 49741
Tssr147058 17 27623757 to 27623785 28 - TSS region transcription start site region 147058
Tssr147059 17 27623788 to 27623815 27 - TSS region transcription start site region 147059
Tssr147060 17 27623820 to 27623831 11 - TSS region transcription start site region 147060
Rps10 17 27630420 to 27635481 5061 - protein coding gene ribosomal protein S10
Cpgi8847 17 27634660 to 27635561 901 CpG island CpG island 8847
Tssr147061 17 27635238 to 27635267 29 - TSS region transcription start site region 147061
Gm15420 17 27635343 to 27636868 1525 + antisense lncRNA gene predicted gene 15420
Cpgi8848 17 27639079 to 27639453 374 CpG island CpG island 8848
Cpgi8849 17 27650208 to 27650398 190 CpG island CpG island 8849
Cpgi8850 17 27654919 to 27656295 1376 CpG island CpG island 8850
Tssr143349 17 27655533 to 27655544 11 + TSS region transcription start site region 143349
Tssr143350 17 27655545 to 27655568 23 + TSS region transcription start site region 143350
Tssr143351 17 27655572 to 27655622 50 + TSS region transcription start site region 143351
Pacsin1 17 27655591 to 27711118 55527 + protein coding gene protein kinase C and casein kinase substrate in neurons 1
Tssr143352 17 27655656 to 27655659 3 + TSS region transcription start site region 143352
Tssr143353 17 27658495 to 27658499 4 + TSS region transcription start site region 143353
D17Mit198 17 27659145 to 27659245 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 198
Tir9 17 27659145 to 43574223 15915078 QTL trypanosome infection response 9
Asbb3 17 27659145 to 27659245 100 QTL autoimmune susceptibility in C57BL/6J and BALB/c 3
D17Dcr1 17 27659146 to 27659250 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 1
Cpgi8851 17 27684721 to 27685806 1085 CpG island CpG island 8851
Tssr143354 17 27685218 to 27685233 15 + TSS region transcription start site region 143354
Tssr143355 17 27685249 to 27685258 9 + TSS region transcription start site region 143355
Cpgi8852 17 27686137 to 27686336 199 CpG island CpG island 8852
Tssr143356 17 27702522 to 27702525 3 + TSS region transcription start site region 143356
Cpgi8853 17 27702609 to 27702871 262 CpG island CpG island 8853
Tssr143357 17 27702715 to 27702741 26 + TSS region transcription start site region 143357
Tssr143358 17 27704472 to 27704487 15 + TSS region transcription start site region 143358
Tssr143359 17 27704500 to 27704505 5 + TSS region transcription start site region 143359
Cpgi8854 17 27707883 to 27708040 157 CpG island CpG island 8854
Spdef 17 27714352 to 27728955 14603 - protein coding gene SAM pointed domain containing ets transcription factor
Cpgi8855 17 27717013 to 27717388 375 CpG island CpG island 8855
Tssr147062 17 27728937 to 27728956 19 - TSS region transcription start site region 147062
Tssr147063 17 27729074 to 27729086 12 - TSS region transcription start site region 147063
Gm15458 17 27735220 to 27741492 6272 + lincRNA gene predicted gene 15458
Ilrun 17 27751232 to 27820542 69310 - protein coding gene inflammation and lipid regulator with UBA-like and NBR1-like domains
Tssr147064 17 27753826 to 27753876 50 - TSS region transcription start site region 147064
Tssr147065 17 27777937 to 27777948 11 - TSS region transcription start site region 147065
Rps2-ps9 17 27784379 to 27785246 867 + pseudogene ribosomal protein S2, pseudogene 9
Tssr147066 17 27797572 to 27797574 2 - TSS region transcription start site region 147066
Cpgi8856 17 27819660 to 27821076 1416 CpG island CpG island 8856
Tssr147067 17 27820445 to 27820464 19 - TSS region transcription start site region 147067
Tssr147068 17 27820473 to 27820482 9 - TSS region transcription start site region 147068
Tssr147069 17 27820498 to 27820529 31 - TSS region transcription start site region 147069
Tssr147070 17 27820534 to 27820572 38 - TSS region transcription start site region 147070
Tssr147071 17 27820613 to 27820683 70 - TSS region transcription start site region 147071
Tssr143360 17 27825229 to 27825249 20 + TSS region transcription start site region 143360
Tssr143361 17 27825279 to 27825300 21 + TSS region transcription start site region 143361
Tssr147072 17 27826037 to 27826044 7 - TSS region transcription start site region 147072
Tssr147073 17 27826924 to 27826958 34 - TSS region transcription start site region 147073
Cpgi8857 17 27839895 to 27840445 550 CpG island CpG island 8857
Tssr143362 17 27840057 to 27840119 62 + TSS region transcription start site region 143362
Snrpc 17 27840087 to 27851968 11881 + protein coding gene U1 small nuclear ribonucleoprotein C
Tssr143363 17 27840125 to 27840143 18 + TSS region transcription start site region 143363
Tssr143364 17 27840156 to 27840177 21 + TSS region transcription start site region 143364
Tssr143365 17 27840203 to 27840214 11 + TSS region transcription start site region 143365
Tssr143366 17 27847969 to 27847983 14 + TSS region transcription start site region 143366
Cpgi8858 17 27856230 to 27857397 1167 CpG island CpG island 8858
Tssr143367 17 27856443 to 27856511 68 + TSS region transcription start site region 143367
Uhrf1bp1 17 27856507 to 27900040 43533 + protein coding gene UHRF1 (ICBP90) binding protein 1
Tssr143368 17 27856520 to 27856544 24 + TSS region transcription start site region 143368
Tssr143369 17 27857240 to 27857247 7 + TSS region transcription start site region 143369
Gm49803 17 27868481 to 27868978 497 - pseudogene predicted gene, 49803
Taf11 17 27901128 to 27909242 8114 - protein coding gene TATA-box binding protein associated factor 11
Tssr147074 17 27904631 to 27904637 6 - TSS region transcription start site region 147074
Cpgi8859 17 27907328 to 27908159 831 CpG island CpG island 8859
Tssr147075 17 27907706 to 27907770 64 - TSS region transcription start site region 147075
Gm49801 17 27907803 to 27908349 546 + antisense lncRNA gene predicted gene, 49801
Tssr143370 17 27907855 to 27907867 12 + TSS region transcription start site region 143370
Cpgi8860 17 27908575 to 27910188 1613 CpG island CpG island 8860
Tssr147076 17 27909110 to 27909146 36 - TSS region transcription start site region 147076
Tssr147077 17 27909206 to 27909264 58 - TSS region transcription start site region 147077
Tssr143371 17 27909287 to 27909314 27 + TSS region transcription start site region 143371
Anks1 17 27909306 to 28062775 153469 + protein coding gene ankyrin repeat and SAM domain containing 1
Tssr143372 17 27909337 to 27909409 72 + TSS region transcription start site region 143372
Tssr147078 17 27909646 to 27909658 12 - TSS region transcription start site region 147078
Tssr147079 17 27910200 to 27910249 49 - TSS region transcription start site region 147079
Tssr5054 17 27935115 to 27935124 9 - TSS region transcription start site region 5054