Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:27158316-27468696

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ip6k3 17 27143971 to 27167764 23793 - protein coding gene inositol hexaphosphate kinase 3
Tssr147008 17 27167705 to 27167736 31 - TSS region transcription start site region 147008
Tssr147009 17 27167748 to 27167757 9 - TSS region transcription start site region 147009
Tssr147010 17 27167759 to 27167777 18 - TSS region transcription start site region 147010
Tssr147011 17 27167789 to 27167801 12 - TSS region transcription start site region 147011
Lemd2 17 27189601 to 27204438 14837 - protein coding gene LEM domain containing 2
Gm26724 17 27201032 to 27203071 2039 + lincRNA gene predicted gene, 26724
Tssr147012 17 27203087 to 27203088 1 - TSS region transcription start site region 147012
Cpgi8838 17 27203292 to 27204970 1678 CpG island CpG island 8838
Tssr143313 17 27203299 to 27203316 17 + TSS region transcription start site region 143313
Tssr143314 17 27203341 to 27203346 5 + TSS region transcription start site region 143314
Tssr147013 17 27204357 to 27204447 90 - TSS region transcription start site region 147013
Tssr147014 17 27204450 to 27204477 27 - TSS region transcription start site region 147014
Gm34736 17 27204515 to 27213810 9295 + lncRNA gene predicted gene, 34736
9630028I04Rik 17 27235075 to 27248066 12991 - lncRNA gene RIKEN cDNA 9630028I04 gene
Tssr147015 17 27242625 to 27242680 55 - TSS region transcription start site region 147015
Tssr147016 17 27245066 to 27245076 10 - TSS region transcription start site region 147016
Gm49793 17 27308316 to 27318696 10380 - lincRNA gene predicted gene, 49793
Mir7214 17 27317035 to 27317095 60 - miRNA gene microRNA 7214
Tssr147017 17 27323182 to 27323193 11 - TSS region transcription start site region 147017
Tssr147018 17 27323320 to 27323361 41 - TSS region transcription start site region 147018
4930556A12Rik 17 27323910 to 27325052 1142 unclassified gene RIKEN cDNA 4930556A12 gene
Tssr147019 17 27325023 to 27325034 11 - TSS region transcription start site region 147019
Gm10505 17 27325035 to 27344833 19798 + lincRNA gene predicted gene 10505
Tssr147020 17 27325048 to 27325056 8 - TSS region transcription start site region 147020
Cpgi8839 17 27325076 to 27325834 758 CpG island CpG island 8839
Tssr143315 17 27325194 to 27325198 4 + TSS region transcription start site region 143315
4930442P07Rik 17 27325353 to 27327009 1656 unclassified gene RIKEN cDNA 4930442P07 gene
Tssr143316 17 27325355 to 27325360 5 + TSS region transcription start site region 143316
Tssr143317 17 27325381 to 27325386 5 + TSS region transcription start site region 143317
Tssr143318 17 27325388 to 27325400 12 + TSS region transcription start site region 143318
Mir7216 17 27328385 to 27328460 75 + miRNA gene microRNA 7216
Tssr143319 17 27342453 to 27342470 17 + TSS region transcription start site region 143319
Gm49795 17 27353861 to 27354668 807 - lincRNA gene predicted gene, 49795
Gm49794 17 27354111 to 27367492 13381 + lincRNA gene predicted gene, 49794
Tssr5051 17 27354800 to 27354803 3 + TSS region transcription start site region 5051
Mir7217 17 27355738 to 27355799 61 + miRNA gene microRNA 7217
Mir7218 17 27358097 to 27358155 58 + miRNA gene microRNA 7218
Tssr147021 17 27364470 to 27364487 17 - TSS region transcription start site region 147021
Gm35007 17 27397020 to 27398874 1854 - lncRNA gene predicted gene, 35007
Tssr143320 17 27398135 to 27398183 48 + TSS region transcription start site region 143320
Gm49796 17 27398147 to 27399221 1074 + lincRNA gene predicted gene, 49796
Tssr143321 17 27398212 to 27398215 3 + TSS region transcription start site region 143321
Grm4 17 27422387 to 27513678 91291 - protein coding gene glutamate receptor, metabotropic 4
Tssr147022 17 27426228 to 27426261 33 - TSS region transcription start site region 147022
Tssr147023 17 27426330 to 27426337 7 - TSS region transcription start site region 147023
Tssr147024 17 27426467 to 27426478 11 - TSS region transcription start site region 147024
Tssr147025 17 27426501 to 27426512 11 - TSS region transcription start site region 147025
Tssr147026 17 27431415 to 27431458 43 - TSS region transcription start site region 147026
Cpgi8840 17 27434701 to 27435523 822 CpG island CpG island 8840
Tssr147027 17 27436717 to 27436722 5 - TSS region transcription start site region 147027
Tssr147028 17 27436754 to 27436767 13 - TSS region transcription start site region 147028
Tssr147029 17 27436868 to 27436877 9 - TSS region transcription start site region 147029
Tssr147030 17 27436942 to 27436960 18 - TSS region transcription start site region 147030
Tssr147031 17 27436998 to 27437008 10 - TSS region transcription start site region 147031
Tssr147032 17 27437031 to 27437039 8 - TSS region transcription start site region 147032
Tssr147033 17 27437080 to 27437093 13 - TSS region transcription start site region 147033
Gm49789 17 27437529 to 27438027 498 + unclassified gene predicted gene, 49789
Tssr5052 17 27444941 to 27444975 34 - TSS region transcription start site region 5052
Tssr147034 17 27445158 to 27445207 49 - TSS region transcription start site region 147034
Tssr147035 17 27467513 to 27467524 11 - TSS region transcription start site region 147035
Tssr147036 17 27467782 to 27467792 10 - TSS region transcription start site region 147036
Tssr147037 17 27467799 to 27467824 25 - TSS region transcription start site region 147037
Tssr147038 17 27467872 to 27467892 20 - TSS region transcription start site region 147038
Gm49790 17 27468492 to 27468889 397 - unclassified gene predicted gene, 49790