Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:26631079-26942521

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ergic1 17 26561489 to 26656931 95442 + protein coding gene endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1
Gm41553 17 26641711 to 26652856 11145 + lncRNA gene predicted gene, 41553
Tssr143260 17 26655919 to 26655955 36 + TSS region transcription start site region 143260
Cpgi8813 17 26662982 to 26663463 481 CpG island CpG island 8813
Tssr143261 17 26663197 to 26663212 15 + TSS region transcription start site region 143261
Cpgi8814 17 26675994 to 26676970 976 CpG island CpG island 8814
Tssr143262 17 26676387 to 26676388 1 + TSS region transcription start site region 143262
Tssr143263 17 26676390 to 26676401 11 + TSS region transcription start site region 143263
Atp6v0e 17 26676396 to 26699644 23248 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit E
Tssr143264 17 26676405 to 26676466 61 + TSS region transcription start site region 143264
Tssr143265 17 26682671 to 26682697 26 + TSS region transcription start site region 143265
Tssr143266 17 26699274 to 26699318 44 + TSS region transcription start site region 143266
Tssr143267 17 26699324 to 26699337 13 + TSS region transcription start site region 143267
Cpgi8815 17 26715337 to 26716751 1414 CpG island CpG island 8815
Tssr143268 17 26715644 to 26715702 58 + TSS region transcription start site region 143268
Crebrf 17 26715650 to 26776635 60985 + protein coding gene CREB3 regulatory factor
Tssr146968 17 26716222 to 26716260 38 - TSS region transcription start site region 146968
D17Mit80 17 26722888 to 26723032 144 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 80
Tssr143269 17 26766547 to 26766593 46 + TSS region transcription start site region 143269
Cpgi8816 17 26780912 to 26781458 546 CpG island CpG island 8816
Tssr143270 17 26781060 to 26781094 34 + TSS region transcription start site region 143270
Bnip1 17 26781079 to 26792521 11442 + protein coding gene BCL2/adenovirus E1B interacting protein 1
Cpgi8817 17 26837021 to 26837400 379 CpG island CpG island 8817
Cpgi8818 17 26838647 to 26840111 1464 CpG island CpG island 8818
Nkx2-5 17 26838664 to 26841565 2901 - protein coding gene NK2 homeobox 5
Cpgi8819 17 26841026 to 26841592 566 CpG island CpG island 8819
Tssr146969 17 26841241 to 26841248 7 - TSS region transcription start site region 146969
Tssr146970 17 26841464 to 26841497 33 - TSS region transcription start site region 146970
Tssr146971 17 26841504 to 26841513 9 - TSS region transcription start site region 146971
Tssr146972 17 26841519 to 26841524 5 - TSS region transcription start site region 146972
Tssr146973 17 26841576 to 26841591 15 - TSS region transcription start site region 146973
Cpgi8820 17 26844338 to 26844913 575 CpG island CpG island 8820
Cpgi8821 17 26849600 to 26851174 1574 CpG island CpG island 8821
Tssr143271 17 26850666 to 26850687 21 + TSS region transcription start site region 143271
Gm17382 17 26860287 to 26886175 25888 - lincRNA gene predicted gene, 17382
Gm20468 17 26861443 to 26897886 36443 + lincRNA gene predicted gene 20468
D17Jcs54 17 26863381 to 26863593 212 DNA segment DNA segment, Chr 17, John C. Schimenti 54
Gm29819 17 26880214 to 26880672 458 - pseudogene predicted gene, 29819
Cpgi8822 17 26885060 to 26885261 201 CpG island CpG island 8822
Tssr143272 17 26885156 to 26885184 28 + TSS region transcription start site region 143272
Cpgi8823 17 26886017 to 26886367 350 CpG island CpG island 8823
Tssr146974 17 26886235 to 26886248 13 - TSS region transcription start site region 146974
Gm41555 17 26896316 to 26900644 4328 - lncRNA gene predicted gene, 41555
D17Jcs124 17 26899109 to 26899294 185 DNA segment DNA segment, Chr 17, John C. Schimenti 124
Cpgi8824 17 26916704 to 26917719 1015 CpG island CpG island 8824
Kifc5b 17 26917091 to 26932579 15488 + protein coding gene kinesin family member C5B
Tssr143273 17 26917096 to 26917107 11 + TSS region transcription start site region 143273
Tssr143274 17 26917111 to 26917159 48 + TSS region transcription start site region 143274
Gm27775 17 26920962 to 26921019 57 + miRNA gene predicted gene, 27775
Cpgi8825 17 26932717 to 26933694 977 CpG island CpG island 8825
Tssr143275 17 26933043 to 26933060 17 + TSS region transcription start site region 143275
Tssr143276 17 26933070 to 26933158 88 + TSS region transcription start site region 143276
Phf1 17 26933127 to 26937890 4763 + protein coding gene PHD finger protein 1
Tssr143277 17 26933301 to 26933385 84 + TSS region transcription start site region 143277
Mir6968 17 26935472 to 26935539 67 + miRNA gene microRNA 6968
Tssr143278 17 26937971 to 26937979 8 + TSS region transcription start site region 143278
Cuta 17 26937973 to 26939478 1505 - protein coding gene cutA divalent cation tolerance homolog
Cpgi8826 17 26938728 to 26940260 1532 CpG island CpG island 8826
Tssr146975 17 26938804 to 26938816 12 - TSS region transcription start site region 146975
Tssr146976 17 26939083 to 26939108 25 - TSS region transcription start site region 146976
Tssr146977 17 26939198 to 26939213 15 - TSS region transcription start site region 146977
Tssr146978 17 26939244 to 26939258 14 - TSS region transcription start site region 146978
Tssr146979 17 26939263 to 26939307 44 - TSS region transcription start site region 146979
Tssr146980 17 26939371 to 26939397 26 - TSS region transcription start site region 146980
Tssr146981 17 26939413 to 26939427 14 - TSS region transcription start site region 146981
Tssr146982 17 26939439 to 26939463 24 - TSS region transcription start site region 146982
Tssr146983 17 26939464 to 26939525 61 - TSS region transcription start site region 146983
Tssr146984 17 26939543 to 26939554 11 - TSS region transcription start site region 146984
Tssr143279 17 26941230 to 26941270 40 + TSS region transcription start site region 143279
Tssr143280 17 26941277 to 26941316 39 + TSS region transcription start site region 143280
Syngap1 17 26941408 to 26972434 31026 + protein coding gene synaptic Ras GTPase activating protein 1 homolog (rat)
Tssr143281 17 26941420 to 26941464 44 + TSS region transcription start site region 143281