Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:24388404-24588450

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abca3 17 24352023 to 24410204 58181 + protein coding gene ATP-binding cassette, sub-family A (ABC1), member 3
Tssr143025 17 24398607 to 24398611 4 + TSS region transcription start site region 143025
D330041H03Rik 17 24409481 to 24414513 5032 - lncRNA gene RIKEN cDNA D330041H03 gene
Cpgi8717 17 24413760 to 24415433 1673 CpG island CpG island 8717
Tssr146727 17 24414397 to 24414451 54 - TSS region transcription start site region 146727
Tssr146728 17 24414470 to 24414484 14 - TSS region transcription start site region 146728
Tssr143026 17 24414640 to 24414691 51 + TSS region transcription start site region 143026
Rnps1 17 24414642 to 24425898 11256 + protein coding gene ribonucleic acid binding protein S1
Tssr143027 17 24414913 to 24414985 72 + TSS region transcription start site region 143027
Tssr146729 17 24415524 to 24415534 10 - TSS region transcription start site region 146729
Tssr143028 17 24419463 to 24419467 4 + TSS region transcription start site region 143028
Tssr143029 17 24424470 to 24424476 6 + TSS region transcription start site region 143029
Tssr143030 17 24425491 to 24425526 35 + TSS region transcription start site region 143030
Cpgi8718 17 24426417 to 24427115 698 CpG island CpG island 8718
Tssr143031 17 24426676 to 24426701 25 + TSS region transcription start site region 143031
Eci1 17 24426683 to 24439316 12633 + protein coding gene enoyl-Coenzyme A delta isomerase 1
Dnase1l2 17 24440081 to 24443105 3024 - protein coding gene deoxyribonuclease 1-like 2
Tssr146730 17 24440395 to 24440399 4 - TSS region transcription start site region 146730
Tssr146731 17 24442157 to 24442184 27 - TSS region transcription start site region 146731
Tssr146732 17 24443077 to 24443090 13 - TSS region transcription start site region 146732
Tssr146733 17 24443093 to 24443109 16 - TSS region transcription start site region 146733
E4f1 17 24443778 to 24455430 11652 - protein coding gene E4F transcription factor 1
Cpgi8719 17 24454606 to 24455577 971 CpG island CpG island 8719
Tssr143032 17 24454856 to 24454881 25 + TSS region transcription start site region 143032
BC026600 17 24454864 to 24457100 2236 unclassified gene cDNA sequence BC026600
Tssr146734 17 24455238 to 24455257 19 - TSS region transcription start site region 146734
Tssr146735 17 24455265 to 24455345 80 - TSS region transcription start site region 146735
4833447I15Rik 17 24461220 to 24470227 9007 - lncRNA gene RIKEN cDNA 4833447I15 gene
Cpgi8720 17 24469757 to 24471474 1717 CpG island CpG island 8720
Tssr143033 17 24470172 to 24470186 14 + TSS region transcription start site region 143033
Tssr143034 17 24470393 to 24470481 88 + TSS region transcription start site region 143034
Pgp 17 24470473 to 24471602 1129 + protein coding gene phosphoglycolate phosphatase
Tssr143035 17 24470486 to 24470503 17 + TSS region transcription start site region 143035
Tssr143036 17 24470821 to 24470835 14 + TSS region transcription start site region 143036
Mlst8 17 24473551 to 24479078 5527 - protein coding gene MTOR associated protein, LST8 homolog (S. cerevisiae)
Bricd5 17 24473884 to 24475469 1585 + protein coding gene BRICHOS domain containing 5
Tssr143037 17 24473895 to 24473922 27 + TSS region transcription start site region 143037
Tssr146736 17 24477591 to 24477604 13 - TSS region transcription start site region 146736
Tssr146737 17 24477611 to 24477622 11 - TSS region transcription start site region 146737
Cpgi8721 17 24478616 to 24479343 727 CpG island CpG island 8721
Tssr146738 17 24479034 to 24479083 49 - TSS region transcription start site region 146738
Gm50062 17 24483215 to 24485254 2039 + lincRNA gene predicted gene, 50062
Cpgi8722 17 24488007 to 24489657 1650 CpG island CpG island 8722
Tssr143038 17 24488404 to 24488450 46 + TSS region transcription start site region 143038
Tssr143039 17 24488583 to 24488666 83 + TSS region transcription start site region 143039
Caskin1 17 24488601 to 24508671 20070 + protein coding gene CASK interacting protein 1
Tssr143040 17 24488671 to 24488682 11 + TSS region transcription start site region 143040
Tssr143041 17 24488737 to 24488771 34 + TSS region transcription start site region 143041
Tssr143042 17 24488773 to 24488799 26 + TSS region transcription start site region 143042
Cpgi8723 17 24504900 to 24505551 651 CpG island CpG island 8723
Cpgi8724 17 24506412 to 24507356 944 CpG island CpG island 8724
Traf7 17 24508850 to 24527938 19088 - protein coding gene TNF receptor-associated factor 7
Tssr146739 17 24514977 to 24515013 36 - TSS region transcription start site region 146739
Cpgi8725 17 24527565 to 24528252 687 CpG island CpG island 8725
Tssr146740 17 24527814 to 24527829 15 - TSS region transcription start site region 146740
Tssr146741 17 24527830 to 24527884 54 - TSS region transcription start site region 146741
Tssr146742 17 24527896 to 24527907 11 - TSS region transcription start site region 146742
Tssr146743 17 24527925 to 24527935 10 - TSS region transcription start site region 146743
Tssr146744 17 24527937 to 24527951 14 - TSS region transcription start site region 146744
Tssr143043 17 24528243 to 24528264 21 + TSS region transcription start site region 143043
Rab26os 17 24528251 to 24528744 493 + antisense lncRNA gene RAB26, member RAS oncogene family, opposite strand
Snord60 17 24528476 to 24528553 77 + snoRNA gene small nucleolar RNA, C/D box 60
Rab26 17 24529054 to 24533747 4693 - protein coding gene RAB26, member RAS oncogene family
Tssr143044 17 24529107 to 24529108 1 + TSS region transcription start site region 143044
Cpgi8726 17 24533057 to 24533995 938 CpG island CpG island 8726
Tssr146745 17 24533709 to 24533732 23 - TSS region transcription start site region 146745
Gm33508 17 24533862 to 24546531 12669 + lncRNA gene predicted gene, 33508
Tssr143045 17 24533885 to 24533900 15 + TSS region transcription start site region 143045
Cpgi8727 17 24544753 to 24544914 161 CpG island CpG island 8727
Tssr143046 17 24548667 to 24548694 27 + TSS region transcription start site region 143046
Tssr143047 17 24548704 to 24548713 9 + TSS region transcription start site region 143047
Tssr143048 17 24549121 to 24549141 20 + TSS region transcription start site region 143048
Cpgi8728 17 24549563 to 24551086 1523 CpG island CpG island 8728
Pkd1 17 24549950 to 24596514 46564 + protein coding gene polycystin 1, transient receptor poteintial channel interacting
Tssr143049 17 24550025 to 24550033 8 + TSS region transcription start site region 143049
Tssr143050 17 24550045 to 24550062 17 + TSS region transcription start site region 143050
Tssr143051 17 24550064 to 24550098 34 + TSS region transcription start site region 143051
Tssr143052 17 24550103 to 24550116 13 + TSS region transcription start site region 143052