Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:22617808-23680667

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn2r112 17 22601148 to 22619133 17985 + protein coding gene vomeronasal 2, receptor 112
D17Jcs137 17 22629350 to 22629564 214 DNA segment DNA segment, Chr 17, John C. Schimenti 137
Tssr142914 17 22674308 to 22674328 20 + TSS region transcription start site region 142914
Tssr142915 17 22674332 to 22674342 10 + TSS region transcription start site region 142915
Tssr142916 17 22674344 to 22674379 35 + TSS region transcription start site region 142916
Tssr142917 17 22674381 to 22674388 7 + TSS region transcription start site region 142917
Tssr142918 17 22674390 to 22674423 33 + TSS region transcription start site region 142918
Rtmq1 17 22681055 to 25502498 2821443 QTL renal tumor modifier QTL 1
Gm9805 17 22687720 to 22690460 2740 + pseudogene predicted gene 9805
Gm20008 17 22713866 to 22716937 3071 - pseudogene predicted gene, 20008
Tssr142919 17 22734826 to 22734858 32 + TSS region transcription start site region 142919
Gm5224 17 22734963 to 22735380 417 + pseudogene predicted pseudogene 5224
Cpgi8667 17 22739599 to 22739943 344 CpG island CpG island 8667
Tssr146606 17 22739892 to 22739937 45 - TSS region transcription start site region 146606
Gm5493 17 22739945 to 22751509 11564 + lincRNA gene predicted gene 5493
Gm16386 17 22776230 to 22817747 41517 - lincRNA gene predicted gene 16386
D17Jcs138 17 22842970 to 22843213 243 DNA segment DNA segment, Chr 17, John C. Schimenti 138
Zfp945 17 22846697 to 22867134 20437 - protein coding gene zinc finger protein 945
Tssr146607 17 22864161 to 22864164 3 - TSS region transcription start site region 146607
Tssr146608 17 22867075 to 22867110 35 - TSS region transcription start site region 146608
Tssr146609 17 22867118 to 22867141 23 - TSS region transcription start site region 146609
Tssr146610 17 22867158 to 22867190 32 - TSS region transcription start site region 146610
Gm32892 17 22873486 to 22874001 515 + pseudogene predicted gene, 32892
Tssr142920 17 22876348 to 22876367 19 + TSS region transcription start site region 142920
Tssr142921 17 22876454 to 22876478 24 + TSS region transcription start site region 142921
Tssr142922 17 22878120 to 22878132 12 + TSS region transcription start site region 142922
Gm18214 17 22895714 to 22897595 1881 + pseudogene predicted gene, 18214
Vmn2r-ps128 17 22916887 to 22932941 16054 - pseudogene vomeronasal 2, receptor, pseudogene 128
Vmn2r113 17 22943184 to 22958814 15630 + protein coding gene vomeronasal 2, receptor 113
Vmn2r-ps129 17 23004971 to 23006659 1688 + pseudogene vomeronasal 2, receptor, pseudogene 129
Gm18415 17 23014387 to 23015033 646 - pseudogene predicted gene, 18415
Gm18396 17 23045498 to 23045858 360 - pseudogene predicted gene, 18396
Vmn2r-ps130 17 23076505 to 23077416 911 + pseudogene vomeronasal 2, receptor, pseudogene 130
Gm18397 17 23086099 to 23086663 564 - pseudogene predicted gene, 18397
Gm18416 17 23116958 to 23117510 552 - pseudogene predicted gene, 18416
Vmn2r-ps131 17 23147808 to 23150667 2859 + pseudogene vomeronasal 2, receptor, pseudogene 131
Gm3748 17 23161576 to 23161912 336 - pseudogene predicted gene 3748
Vmn2r-ps132 17 23167359 to 23167988 629 - pseudogene vomeronasal 2, receptor, pseudogene 132
Zfp40 17 23173869 to 23193252 19383 - protein coding gene zinc finger protein 40
Tssr146611 17 23193144 to 23193173 29 - TSS region transcription start site region 146611
Tssr146612 17 23193175 to 23193208 33 - TSS region transcription start site region 146612
Tssr146613 17 23193216 to 23193258 42 - TSS region transcription start site region 146613
D17Jcs139 17 23201468 to 23201701 233 DNA segment DNA segment, Chr 17, John C. Schimenti 139
Vmn2r-ps133 17 23241668 to 23277178 35510 - pseudogene vomeronasal 2, receptor, pseudogene 133
Vmn2r114 17 23290934 to 23312313 21379 - protein coding gene vomeronasal 2, receptor 114
Vmn2r115 17 23343977 to 23360128 16151 + protein coding gene vomeronasal 2, receptor 115
Vmn2r116 17 23384803 to 23401864 17061 + protein coding gene vomeronasal 2, receptor 116
Gm49952 17 23415541 to 23415778 237 + pseudogene predicted gene, 49952
Vmn2r-ps134 17 23441014 to 23446165 5151 - pseudogene vomeronasal 2, receptor, pseudogene 134
Vmn2r117 17 23459675 to 23479597 19922 - protein coding gene vomeronasal 2, receptor 117
Olfr752-ps1 17 23491635 to 23492427 792 - pseudogene olfactory receptor 752, pseudogene 1
Gm7898 17 23515454 to 23515784 330 + pseudogene predicted gene 7898
n-TKctt13 17 23533962 to 23534034 72 + tRNA gene nuclear encoded tRNA lysine 13 (anticodon CTT)
n-TKctt12 17 23535332 to 23535404 72 - tRNA gene nuclear encoded tRNA lysine 12 (anticodon CTT)
Gm41543 17 23537670 to 23538674 1004 - lncRNA gene predicted gene, 41543
Cpgi8668 17 23537840 to 23538270 430 CpG island CpG island 8668
n-TPtgg1 17 23538766 to 23538837 71 - tRNA gene nuclear encoded tRNA proline 1 (anticodon TGG)
n-TPcgg1 17 23540915 to 23540986 71 + tRNA gene nuclear encoded tRNA proline 1 (anticodon CGG)
Cpgi8669 17 23546420 to 23547285 865 CpG island CpG island 8669
n-TPtgg6 17 23546476 to 23546547 71 - tRNA gene nuclear encoded tRNA proline 6 (anticodon TGG)
n-TKctt14 17 23547360 to 23547432 72 + tRNA gene nuclear encoded tRNA lysine 14 (anticodon CTT)
n-TRcct2 17 23548768 to 23548840 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCT)
Cpgi8670 17 23548841 to 23549111 270 CpG island CpG island 8670
n-TRccg2 17 23550263 to 23550335 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon CCG)
Cpgi8671 17 23550715 to 23551100 385 CpG island CpG island 8671
6330415G19Rik 17 23550799 to 23565291 14492 + antisense lncRNA gene RIKEN cDNA 6330415G19 gene
Casp16 17 23551080 to 23555330 4250 - polymorphic pseudogene caspase 16, apoptosis-related cysteine peptidase
Zfp213 17 23556767 to 23564226 7459 - protein coding gene zinc finger protein 213
Gm26695 17 23556769 to 23558313 1544 + lincRNA gene predicted gene, 26695
Cpgi8672 17 23563741 to 23564614 873 CpG island CpG island 8672
Tssr146614 17 23564117 to 23564161 44 - TSS region transcription start site region 146614
Tssr142923 17 23564269 to 23564299 30 + TSS region transcription start site region 142923
Gm49092 17 23572492 to 23573427 935 - lincRNA gene predicted gene, 49092
Zfp13 17 23575844 to 23599487 23643 - protein coding gene zinc finger protein 13
Cpgi8673 17 23575976 to 23576911 935 CpG island CpG island 8673
Cpgi8674 17 23585674 to 23586129 455 CpG island CpG island 8674
Tssr146615 17 23586214 to 23586269 55 - TSS region transcription start site region 146615
Cpgi8675 17 23592469 to 23593099 630 CpG island CpG island 8675
Tssr142924 17 23599276 to 23599332 56 + TSS region transcription start site region 142924
Cpgi8676 17 23599281 to 23599542 261 CpG island CpG island 8676
Tssr5029 17 23599484 to 23599490 6 - TSS region transcription start site region 5029
Tssr146616 17 23599538 to 23599547 9 - TSS region transcription start site region 146616
Tssr142925 17 23600805 to 23600820 15 + TSS region transcription start site region 142925
Tssr142926 17 23600832 to 23600839 7 + TSS region transcription start site region 142926
Tssr142927 17 23600844 to 23600883 39 + TSS region transcription start site region 142927
Zscan10 17 23600856 to 23611019 10163 + protein coding gene zinc finger and SCAN domain containing 10
Tssr142928 17 23600887 to 23600929 42 + TSS region transcription start site region 142928
Tssr142929 17 23601475 to 23601514 39 + TSS region transcription start site region 142929
Tssr142930 17 23604632 to 23604658 26 + TSS region transcription start site region 142930
Tssr142931 17 23604671 to 23604683 12 + TSS region transcription start site region 142931
Tssr142932 17 23604690 to 23604706 16 + TSS region transcription start site region 142932
Tssr142933 17 23604709 to 23604725 16 + TSS region transcription start site region 142933
Cpgi8677 17 23609525 to 23610917 1392 CpG island CpG island 8677
Tssr142934 17 23610467 to 23610489 22 + TSS region transcription start site region 142934
Tssr146617 17 23610639 to 23610655 16 - TSS region transcription start site region 146617
Tssr142935 17 23617303 to 23617308 5 + TSS region transcription start site region 142935
Gm7912 17 23619236 to 23620900 1664 - pseudogene predicted gene 7912
Tssr146618 17 23620431 to 23620446 15 - TSS region transcription start site region 146618
Tssr142936 17 23620763 to 23620785 22 + TSS region transcription start site region 142936
Mmp25 17 23629169 to 23645269 16100 - protein coding gene matrix metallopeptidase 25
Cpgi8678 17 23630352 to 23630526 174 CpG island CpG island 8678
Gm49935 17 23636596 to 23636739 143 + pseudogene predicted gene, 49935
Tssr146619 17 23641723 to 23641766 43 - TSS region transcription start site region 146619
Tssr142937 17 23642197 to 23642213 16 + TSS region transcription start site region 142937
Gm7773 17 23642237 to 23643144 907 + pseudogene predicted gene 7773
Cpgi8679 17 23644548 to 23645471 923 CpG island CpG island 8679
Tssr146620 17 23644953 to 23644958 5 - TSS region transcription start site region 146620
Tssr146621 17 23644979 to 23644996 17 - TSS region transcription start site region 146621
Tssr146622 17 23644999 to 23645037 38 - TSS region transcription start site region 146622
Tssr146623 17 23645047 to 23645055 8 - TSS region transcription start site region 146623
Tssr146624 17 23645066 to 23645073 7 - TSS region transcription start site region 146624
Tssr146625 17 23645232 to 23645261 29 - TSS region transcription start site region 146625
Tssr146626 17 23645264 to 23645309 45 - TSS region transcription start site region 146626
Cpgi8680 17 23660406 to 23661086 680 CpG island CpG island 8680
Tssr142938 17 23660477 to 23660525 48 + TSS region transcription start site region 142938
Bicdl2 17 23660506 to 23668621 8115 + protein coding gene BICD family like cargo adaptor 2
Tssr142939 17 23665010 to 23665016 6 + TSS region transcription start site region 142939
Cpgi8681 17 23665370 to 23665567 197 CpG island CpG island 8681
Thoc6 17 23668614 to 23673882 5268 - protein coding gene THO complex 6
Tssr146627 17 23669921 to 23669938 17 - TSS region transcription start site region 146627
Tssr146628 17 23669946 to 23669967 21 - TSS region transcription start site region 146628
Tssr146629 17 23669969 to 23670004 35 - TSS region transcription start site region 146629
Tssr5030 17 23670009 to 23670010 1 - TSS region transcription start site region 5030
Tssr146630 17 23670785 to 23670792 7 - TSS region transcription start site region 146630
Tssr146631 17 23670863 to 23670873 10 - TSS region transcription start site region 146631
Tssr146632 17 23670890 to 23670913 23 - TSS region transcription start site region 146632
Tssr146633 17 23670924 to 23670941 17 - TSS region transcription start site region 146633
Tssr146634 17 23670943 to 23670944 1 - TSS region transcription start site region 146634
Cpgi8682 17 23673381 to 23674113 732 CpG island CpG island 8682
Tssr146635 17 23673557 to 23673577 20 - TSS region transcription start site region 146635
Tssr142940 17 23673581 to 23673652 71 + TSS region transcription start site region 142940
Hcfc1r1 17 23673596 to 23675227 1631 + protein coding gene host cell factor C1 regulator 1 (XPO1-dependent)
Tssr146636 17 23673825 to 23673887 62 - TSS region transcription start site region 146636
Tssr142941 17 23673898 to 23673987 89 + TSS region transcription start site region 142941
Tssr142942 17 23673990 to 23674001 11 + TSS region transcription start site region 142942
Pbft7 17 23674962 to 23674962 0 QTL percent body fat 7
Tssr146637 17 23675059 to 23675104 45 - TSS region transcription start site region 146637
Tnfrsf12a 17 23675445 to 23677449 2004 - protein coding gene tumor necrosis factor receptor superfamily, member 12a
Tssr146638 17 23675851 to 23675888 37 - TSS region transcription start site region 146638
Cpgi8683 17 23676440 to 23677628 1188 CpG island CpG island 8683
Tssr146639 17 23676562 to 23676583 21 - TSS region transcription start site region 146639
Tssr146640 17 23676587 to 23676629 42 - TSS region transcription start site region 146640
Tssr146641 17 23676641 to 23676646 5 - TSS region transcription start site region 146641
Tssr146642 17 23676660 to 23676684 24 - TSS region transcription start site region 146642
Tssr146643 17 23677432 to 23677456 24 - TSS region transcription start site region 146643
Tssr146644 17 23677477 to 23677484 7 - TSS region transcription start site region 146644
Cpgi8684 17 23679292 to 23679881 589 CpG island CpG island 8684
Cldn6 17 23679348 to 23682446 3098 + protein coding gene claudin 6
Tssr142943 17 23679363 to 23679377 14 + TSS region transcription start site region 142943
Tssr142944 17 23679672 to 23679736 64 + TSS region transcription start site region 142944
Tssr142945 17 23679737 to 23679755 18 + TSS region transcription start site region 142945
Tssr146645 17 23680430 to 23680442 12 - TSS region transcription start site region 146645