Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:9978534-10278554

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grin2a 16 9577039 to 9996500 419461 - protein coding gene glutamate receptor, ionotropic, NMDA2A (epsilon 1)
Cpgi7945 16 9992195 to 9996027 3832 CpG island CpG island 7945
Tssr139893 16 9994547 to 9994567 20 - TSS region transcription start site region 139893
Tssr139894 16 9995000 to 9995012 12 - TSS region transcription start site region 139894
Tssr139895 16 9995044 to 9995088 44 - TSS region transcription start site region 139895
Tssr139896 16 9995299 to 9995304 5 - TSS region transcription start site region 139896
Tssr139897 16 9995315 to 9995343 28 - TSS region transcription start site region 139897
Tssr139898 16 9995348 to 9995372 24 - TSS region transcription start site region 139898
Tssr139899 16 9995378 to 9995400 22 - TSS region transcription start site region 139899
Tssr139900 16 9995412 to 9995443 31 - TSS region transcription start site region 139900
Tssr139901 16 9995508 to 9995519 11 - TSS region transcription start site region 139901
Tssr139902 16 9995526 to 9995549 23 - TSS region transcription start site region 139902
Tssr139903 16 9995562 to 9995581 19 - TSS region transcription start site region 139903
Tssr139904 16 9995628 to 9995669 41 - TSS region transcription start site region 139904
Tssr139905 16 9995701 to 9995725 24 - TSS region transcription start site region 139905
Tssr139906 16 9995806 to 9995818 12 - TSS region transcription start site region 139906
Gm30668 16 10005988 to 9997209 -8779 - lncRNA gene predicted gene, 30668
Gm7572 16 10044965 to 10045730 765 + pseudogene predicted gene 7572
Gm3890 16 10045759 to 10045965 206 - pseudogene predicted gene 3890
Tssr139907 16 10128534 to 10128554 20 - TSS region transcription start site region 139907
Cpgi7946 16 10170071 to 10170331 260 CpG island CpG island 7946
Tssr137020 16 10170216 to 10170227 11 + TSS region transcription start site region 137020
Rpl39l 16 10170226 to 10174911 4685 + protein coding gene ribosomal protein L39-like
Tssr137021 16 10170228 to 10170263 35 + TSS region transcription start site region 137021
Gm49455 16 10186293 to 10227524 41231 - antisense lncRNA gene predicted gene, 49455
Atf7ip2 16 10192638 to 10249669 57031 + protein coding gene activating transcription factor 7 interacting protein 2
Cpgi7947 16 10192703 to 10193479 776 CpG island CpG island 7947
Tssr4789 16 10192876 to 10192883 7 + TSS region transcription start site region 4789
Tssr137022 16 10192910 to 10192927 17 + TSS region transcription start site region 137022
Gm24667 16 10237918 to 10238020 102 + snRNA gene predicted gene, 24667
Gm49456 16 10238166 to 10238516 350 + pseudogene predicted gene, 49456
Gm22932 16 10273750 to 10273821 71 + miRNA gene predicted gene, 22932
2310063J23Rik 16 10276946 to 10277121 175 unclassified gene RIKEN cDNA 2310063J23 gene