Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:8881969-10261970

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30310 16 8881614 to 8896050 14436 + lncRNA gene predicted gene, 30310
Gm10247 16 8922060 to 8922389 329 - pseudogene predicted gene 10247
Tssr137016 16 8944889 to 8944910 21 + TSS region transcription start site region 137016
Gm30371 16 8961301 to 8969900 8599 + lincRNA gene predicted gene, 30371
Gm49447 16 8996088 to 8996396 308 - pseudogene predicted gene, 49447
Gm30444 16 8997527 to 9007239 9712 + lncRNA gene predicted gene, 30444
Cpgi7944 16 9009512 to 9009694 182 CpG island CpG island 7944
Gm30567 16 9054647 to 9055420 773 + lincRNA gene predicted gene, 30567
D16Mit162 16 9062913 to 9063031 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 162
Gm49448 16 9079396 to 9137444 58048 + lincRNA gene predicted gene, 49448
Gm18722 16 9104706 to 9106942 2236 - pseudogene predicted gene, 18722
Tssr137017 16 9133175 to 9133191 16 + TSS region transcription start site region 137017
Tssr137018 16 9133265 to 9133277 12 + TSS region transcription start site region 137018
Tssr137019 16 9133295 to 9133310 15 + TSS region transcription start site region 137019
Tssr139885 16 9150855 to 9150859 4 - TSS region transcription start site region 139885
Gm49451 16 9158770 to 9162334 3564 + lincRNA gene predicted gene, 49451
Gm41418 16 9279972 to 9290565 10593 + lncRNA gene predicted gene, 41418
D16Mit109 16 9482993 to 9483122 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 109
Tssr139886 16 9570987 to 9570994 7 - TSS region transcription start site region 139886
Tssr139887 16 9571969 to 9571970 1 - TSS region transcription start site region 139887
Grin2a 16 9577039 to 9996500 419461 - protein coding gene glutamate receptor, ionotropic, NMDA2A (epsilon 1)
D16Mit87 16 9812751 to 9812884 133 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 87
Gm19143 16 9819893 to 9820568 675 + pseudogene predicted gene, 19143
Tssr139888 16 9895029 to 9895043 14 - TSS region transcription start site region 139888
D16Mit183 16 9916544 to 9916658 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 183
Tssr139889 16 9919755 to 9919768 13 - TSS region transcription start site region 139889
Tssr139890 16 9919798 to 9919810 12 - TSS region transcription start site region 139890
Tssr139891 16 9921156 to 9921174 18 - TSS region transcription start site region 139891
2900045O03Rik 16 9935229 to 9935829 600 unclassified non-coding RNA gene RIKEN cDNA 2900045O03 gene
D16Mit33 16 9945538 to 9945663 125 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 33
Tssr139892 16 9967454 to 9967465 11 - TSS region transcription start site region 139892
Tssr4788 16 9967489 to 9967501 12 - TSS region transcription start site region 4788
Cpgi7945 16 9992195 to 9996027 3832 CpG island CpG island 7945
Tssr139893 16 9994547 to 9994567 20 - TSS region transcription start site region 139893
Tssr139894 16 9995000 to 9995012 12 - TSS region transcription start site region 139894
Tssr139895 16 9995044 to 9995088 44 - TSS region transcription start site region 139895
Tssr139896 16 9995299 to 9995304 5 - TSS region transcription start site region 139896
Tssr139897 16 9995315 to 9995343 28 - TSS region transcription start site region 139897
Tssr139898 16 9995348 to 9995372 24 - TSS region transcription start site region 139898
Tssr139899 16 9995378 to 9995400 22 - TSS region transcription start site region 139899
Tssr139900 16 9995412 to 9995443 31 - TSS region transcription start site region 139900
Tssr139901 16 9995508 to 9995519 11 - TSS region transcription start site region 139901
Tssr139902 16 9995526 to 9995549 23 - TSS region transcription start site region 139902
Tssr139903 16 9995562 to 9995581 19 - TSS region transcription start site region 139903
Tssr139904 16 9995628 to 9995669 41 - TSS region transcription start site region 139904
Tssr139905 16 9995701 to 9995725 24 - TSS region transcription start site region 139905
Tssr139906 16 9995806 to 9995818 12 - TSS region transcription start site region 139906
Gm30668 16 10005988 to 9997209 -8779 - lncRNA gene predicted gene, 30668
Gm7572 16 10044965 to 10045730 765 + pseudogene predicted gene 7572
Gm3890 16 10045759 to 10045965 206 - pseudogene predicted gene 3890
Tssr139907 16 10128534 to 10128554 20 - TSS region transcription start site region 139907
Cpgi7946 16 10170071 to 10170331 260 CpG island CpG island 7946
Tssr137020 16 10170216 to 10170227 11 + TSS region transcription start site region 137020
Rpl39l 16 10170226 to 10174911 4685 + protein coding gene ribosomal protein L39-like
Tssr137021 16 10170228 to 10170263 35 + TSS region transcription start site region 137021
Gm49455 16 10186293 to 10227524 41231 - antisense lncRNA gene predicted gene, 49455
Atf7ip2 16 10192638 to 10249669 57031 + protein coding gene activating transcription factor 7 interacting protein 2
Cpgi7947 16 10192703 to 10193479 776 CpG island CpG island 7947
Tssr4789 16 10192876 to 10192883 7 + TSS region transcription start site region 4789
Tssr137022 16 10192910 to 10192927 17 + TSS region transcription start site region 137022
Gm24667 16 10237918 to 10238020 102 + snRNA gene predicted gene, 24667
Gm49456 16 10238166 to 10238516 350 + pseudogene predicted gene, 49456