Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:7483374-8723788

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49533 16 7708736 to 7709066 330 - pseudogene predicted gene, 49533
Tssr4787 16 7767870 to 7767879 9 + TSS region transcription start site region 4787
Gm29854 16 7767891 to 7771595 3704 + lncRNA gene predicted gene, 29854
Tssr136989 16 7828205 to 7828208 3 + TSS region transcription start site region 136989
Gm49534 16 7870102 to 7879859 9757 + lincRNA gene predicted gene, 49534
Tssr139854 16 7951666 to 7951676 10 - TSS region transcription start site region 139854
D16Mit142 16 7983236 to 7983378 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 142
Gm49535 16 8103374 to 8103788 414 - pseudogene predicted gene, 49535
Gm23476 16 8203975 to 8204248 273 + unclassified non-coding RNA gene predicted gene, 23476
Gm26159 16 8336993 to 8337096 103 + snRNA gene predicted gene, 26159
Gm29936 16 8338906 to 8365012 26106 - lncRNA gene predicted gene, 29936
Tssr139855 16 8362727 to 8362737 10 - TSS region transcription start site region 139855
Gm24579 16 8402814 to 8402957 143 + snoRNA gene predicted gene, 24579
Tmem114 16 8409276 to 8425136 15860 - protein coding gene transmembrane protein 114
Cpgi7937 16 8424209 to 8425223 1014 CpG island CpG island 7937
Tssr139856 16 8425104 to 8425144 40 - TSS region transcription start site region 139856
Tssr139857 16 8425150 to 8425161 11 - TSS region transcription start site region 139857
Gm25782 16 8449498 to 8449786 288 - unclassified non-coding RNA gene predicted gene, 25782
Gm30012 16 8457687 to 8473692 16005 - lncRNA gene predicted gene, 30012
Cpgi7938 16 8470608 to 8471285 677 CpG island CpG island 7938
Mettl22 16 8470751 to 8490205 19454 + protein coding gene methyltransferase like 22
Tssr136990 16 8470763 to 8470807 44 + TSS region transcription start site region 136990
Tssr139858 16 8471079 to 8471107 28 - TSS region transcription start site region 139858
Gm23706 16 8480660 to 8480741 81 - snoRNA gene predicted gene, 23706
Cpgi7939 16 8513146 to 8513742 596 CpG island CpG island 7939
Abat 16 8513429 to 8621568 108139 + protein coding gene 4-aminobutyrate aminotransferase
Tssr136991 16 8513472 to 8513497 25 + TSS region transcription start site region 136991
Tssr136992 16 8594677 to 8594680 3 + TSS region transcription start site region 136992
Gm18792 16 8612812 to 8613451 639 + pseudogene predicted gene, 18792
Tssr136993 16 8618894 to 8618904 10 + TSS region transcription start site region 136993
Gm9851 16 8618948 to 8621217 2269 protein coding gene predicted gene 9851
Tssr136994 16 8619409 to 8619421 12 + TSS region transcription start site region 136994
Tssr136995 16 8619490 to 8619499 9 + TSS region transcription start site region 136995
Tssr136996 16 8619508 to 8619515 7 + TSS region transcription start site region 136996
Tssr136997 16 8619597 to 8619623 26 + TSS region transcription start site region 136997
Tssr136998 16 8619797 to 8619811 14 + TSS region transcription start site region 136998
Gm22137 16 8623163 to 8623270 107 - miRNA gene predicted gene, 22137
Gm7541 16 8623186 to 8623720 534 - pseudogene predicted gene 7541
Tssr139859 16 8623927 to 8623933 6 - TSS region transcription start site region 139859
Gm49549 16 8625209 to 8625317 108 - pseudogene predicted gene, 49549
Tmem186 16 8633731 to 8637701 3970 - protein coding gene transmembrane protein 186
Cpgi7940 16 8636953 to 8638013 1060 CpG island CpG island 7940
Tssr139860 16 8637514 to 8637553 39 - TSS region transcription start site region 139860
Tssr139861 16 8637576 to 8637587 11 - TSS region transcription start site region 139861
Tssr139862 16 8637662 to 8637703 41 - TSS region transcription start site region 139862
Pmm2 16 8637707 to 8657549 19842 + protein coding gene phosphomannomutase 2
Tssr136999 16 8637712 to 8637776 64 + TSS region transcription start site region 136999
Tssr137000 16 8638009 to 8638029 20 + TSS region transcription start site region 137000
Carhsp1 16 8658580 to 8672153 13573 - protein coding gene calcium regulated heat stable protein 1
Tssr139863 16 8660613 to 8660637 24 - TSS region transcription start site region 139863
Tssr139864 16 8666487 to 8666496 9 - TSS region transcription start site region 139864
Tssr139865 16 8666504 to 8666520 16 - TSS region transcription start site region 139865
Tssr139866 16 8666521 to 8666558 37 - TSS region transcription start site region 139866
Tssr139867 16 8667410 to 8667415 5 - TSS region transcription start site region 139867
Cpgi7941 16 8671506 to 8672514 1008 CpG island CpG island 7941
Tssr139868 16 8671593 to 8671606 13 - TSS region transcription start site region 139868
Tssr139869 16 8672145 to 8672161 16 - TSS region transcription start site region 139869
Tssr139870 16 8672163 to 8672186 23 - TSS region transcription start site region 139870
Tssr137001 16 8680758 to 8680790 32 + TSS region transcription start site region 137001
Gm5767 16 8680770 to 8683911 3141 + protein coding gene predicted gene 5767
Tssr137002 16 8680791 to 8680794 3 + TSS region transcription start site region 137002
Tssr137003 16 8680811 to 8680817 6 + TSS region transcription start site region 137003
Tssr139871 16 8682743 to 8682751 8 - TSS region transcription start site region 139871
Tssr137004 16 8682871 to 8682879 8 + TSS region transcription start site region 137004
Usp7 16 8688722 to 8757067 68345 - protein coding gene ubiquitin specific peptidase 7
Tssr139872 16 8695061 to 8695064 3 - TSS region transcription start site region 139872
Tssr139873 16 8721666 to 8721690 24 - TSS region transcription start site region 139873
Tssr139874 16 8721696 to 8721699 3 - TSS region transcription start site region 139874
Tssr139875 16 8721712 to 8721717 5 - TSS region transcription start site region 139875
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a