Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:7382514-9892553

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123 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox1 16 5885355 to 7411526 1526171 + protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 1
Tssr136988 16 7409781 to 7409794 13 + TSS region transcription start site region 136988
D16Mit122 16 7445880 to 7445989 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 122
Nhdlq10 16 7445880 to 7445989 109 QTL non-HDL QTL 10
Heal11 16 7445880 to 7445989 109 QTL wound healing/regeneration 11
Gm49533 16 7708736 to 7709066 330 - pseudogene predicted gene, 49533
Tssr4787 16 7767870 to 7767879 9 + TSS region transcription start site region 4787
Gm29854 16 7767891 to 7771595 3704 + lncRNA gene predicted gene, 29854
Tssr136989 16 7828205 to 7828208 3 + TSS region transcription start site region 136989
Gm49534 16 7870102 to 7879859 9757 + lincRNA gene predicted gene, 49534
Tssr139854 16 7951666 to 7951676 10 - TSS region transcription start site region 139854
D16Mit142 16 7983236 to 7983378 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 142
Gm49535 16 8103374 to 8103788 414 - pseudogene predicted gene, 49535
Gm23476 16 8203975 to 8204248 273 + unclassified non-coding RNA gene predicted gene, 23476
Gm26159 16 8336993 to 8337096 103 + snRNA gene predicted gene, 26159
Gm29936 16 8338906 to 8365012 26106 - lncRNA gene predicted gene, 29936
Tssr139855 16 8362727 to 8362737 10 - TSS region transcription start site region 139855
Gm24579 16 8402814 to 8402957 143 + snoRNA gene predicted gene, 24579
Tmem114 16 8409276 to 8425136 15860 - protein coding gene transmembrane protein 114
Cpgi7937 16 8424209 to 8425223 1014 CpG island CpG island 7937
Tssr139856 16 8425104 to 8425144 40 - TSS region transcription start site region 139856
Tssr139857 16 8425150 to 8425161 11 - TSS region transcription start site region 139857
Gm25782 16 8449498 to 8449786 288 - unclassified non-coding RNA gene predicted gene, 25782
Gm30012 16 8457687 to 8473692 16005 - lncRNA gene predicted gene, 30012
Cpgi7938 16 8470608 to 8471285 677 CpG island CpG island 7938
Mettl22 16 8470751 to 8490205 19454 + protein coding gene methyltransferase like 22
Tssr136990 16 8470763 to 8470807 44 + TSS region transcription start site region 136990
Tssr139858 16 8471079 to 8471107 28 - TSS region transcription start site region 139858
Gm23706 16 8480660 to 8480741 81 - snoRNA gene predicted gene, 23706
Cpgi7939 16 8513146 to 8513742 596 CpG island CpG island 7939
Abat 16 8513429 to 8621568 108139 + protein coding gene 4-aminobutyrate aminotransferase
Tssr136991 16 8513472 to 8513497 25 + TSS region transcription start site region 136991
Tssr136992 16 8594677 to 8594680 3 + TSS region transcription start site region 136992
Gm18792 16 8612812 to 8613451 639 + pseudogene predicted gene, 18792
Tssr136993 16 8618894 to 8618904 10 + TSS region transcription start site region 136993
Gm9851 16 8618948 to 8621217 2269 protein coding gene predicted gene 9851
Tssr136994 16 8619409 to 8619421 12 + TSS region transcription start site region 136994
Tssr136995 16 8619490 to 8619499 9 + TSS region transcription start site region 136995
Tssr136996 16 8619508 to 8619515 7 + TSS region transcription start site region 136996
Tssr136997 16 8619597 to 8619623 26 + TSS region transcription start site region 136997
Tssr136998 16 8619797 to 8619811 14 + TSS region transcription start site region 136998
Gm22137 16 8623163 to 8623270 107 - miRNA gene predicted gene, 22137
Gm7541 16 8623186 to 8623720 534 - pseudogene predicted gene 7541
Tssr139859 16 8623927 to 8623933 6 - TSS region transcription start site region 139859
Gm49549 16 8625209 to 8625317 108 - pseudogene predicted gene, 49549
Tmem186 16 8633731 to 8637701 3970 - protein coding gene transmembrane protein 186
Cpgi7940 16 8636953 to 8638013 1060 CpG island CpG island 7940
Tssr139860 16 8637514 to 8637553 39 - TSS region transcription start site region 139860
Tssr139861 16 8637576 to 8637587 11 - TSS region transcription start site region 139861
Tssr139862 16 8637662 to 8637703 41 - TSS region transcription start site region 139862
Pmm2 16 8637707 to 8657549 19842 + protein coding gene phosphomannomutase 2
Tssr136999 16 8637712 to 8637776 64 + TSS region transcription start site region 136999
Tssr137000 16 8638009 to 8638029 20 + TSS region transcription start site region 137000
Carhsp1 16 8658580 to 8672153 13573 - protein coding gene calcium regulated heat stable protein 1
Tssr139863 16 8660613 to 8660637 24 - TSS region transcription start site region 139863
Tssr139864 16 8666487 to 8666496 9 - TSS region transcription start site region 139864
Tssr139865 16 8666504 to 8666520 16 - TSS region transcription start site region 139865
Tssr139866 16 8666521 to 8666558 37 - TSS region transcription start site region 139866
Tssr139867 16 8667410 to 8667415 5 - TSS region transcription start site region 139867
Cpgi7941 16 8671506 to 8672514 1008 CpG island CpG island 7941
Tssr139868 16 8671593 to 8671606 13 - TSS region transcription start site region 139868
Tssr139869 16 8672145 to 8672161 16 - TSS region transcription start site region 139869
Tssr139870 16 8672163 to 8672186 23 - TSS region transcription start site region 139870
Tssr137001 16 8680758 to 8680790 32 + TSS region transcription start site region 137001
Gm5767 16 8680770 to 8683911 3141 + protein coding gene predicted gene 5767
Tssr137002 16 8680791 to 8680794 3 + TSS region transcription start site region 137002
Tssr137003 16 8680811 to 8680817 6 + TSS region transcription start site region 137003
Tssr139871 16 8682743 to 8682751 8 - TSS region transcription start site region 139871
Tssr137004 16 8682871 to 8682879 8 + TSS region transcription start site region 137004
Usp7 16 8688722 to 8757067 68345 - protein coding gene ubiquitin specific peptidase 7
Tssr139872 16 8695061 to 8695064 3 - TSS region transcription start site region 139872
Tssr139873 16 8721666 to 8721690 24 - TSS region transcription start site region 139873
Tssr139874 16 8721696 to 8721699 3 - TSS region transcription start site region 139874
Tssr139875 16 8721712 to 8721717 5 - TSS region transcription start site region 139875
Cpgi7942 16 8737516 to 8739432 1916 CpG island CpG island 7942
Tssr139876 16 8737733 to 8737741 8 - TSS region transcription start site region 139876
Tssr139877 16 8738884 to 8738895 11 - TSS region transcription start site region 139877
Tssr139878 16 8738899 to 8738952 53 - TSS region transcription start site region 139878
Tssr139879 16 8738961 to 8738975 14 - TSS region transcription start site region 139879
Gm25805 16 8766169 to 8766276 107 - snRNA gene predicted gene, 25805
Tssr137005 16 8770600 to 8770610 10 + TSS region transcription start site region 137005
Tssr139880 16 8783378 to 8783402 24 - TSS region transcription start site region 139880
Tssr139881 16 8792302 to 8792326 24 - TSS region transcription start site region 139881
Tssr139882 16 8792331 to 8792348 17 - TSS region transcription start site region 139882
Tssr139883 16 8792366 to 8792377 11 - TSS region transcription start site region 139883
Tssr139884 16 8823808 to 8823826 18 - TSS region transcription start site region 139884
Cpgi7943 16 8829109 to 8831508 2399 CpG island CpG island 7943
Tssr137006 16 8829996 to 8830021 25 + TSS region transcription start site region 137006
Tssr137007 16 8830037 to 8830058 21 + TSS region transcription start site region 137007
Tssr137008 16 8830093 to 8830104 11 + TSS region transcription start site region 137008
1810013L24Rik 16 8830100 to 8858922 28822 + protein coding gene RIKEN cDNA 1810013L24 gene
Tssr137009 16 8830115 to 8830142 27 + TSS region transcription start site region 137009
Tssr137010 16 8831096 to 8831110 14 + TSS region transcription start site region 137010
Tssr137011 16 8835964 to 8835970 6 + TSS region transcription start site region 137011
Tssr137012 16 8837762 to 8837766 4 + TSS region transcription start site region 137012
Tssr137013 16 8839526 to 8839529 3 + TSS region transcription start site region 137013
Tssr137014 16 8850813 to 8850817 4 + TSS region transcription start site region 137014
Tssr137015 16 8856993 to 8857000 7 + TSS region transcription start site region 137015
Gm22224 16 8873079 to 8873171 92 - rRNA gene predicted gene, 22224
Gm30310 16 8881614 to 8896050 14436 + lncRNA gene predicted gene, 30310
Gm10247 16 8922060 to 8922389 329 - pseudogene predicted gene 10247
Tssr137016 16 8944889 to 8944910 21 + TSS region transcription start site region 137016
Gm30371 16 8961301 to 8969900 8599 + lincRNA gene predicted gene, 30371
Gm49447 16 8996088 to 8996396 308 - pseudogene predicted gene, 49447
Gm30444 16 8997527 to 9007239 9712 + lncRNA gene predicted gene, 30444
Cpgi7944 16 9009512 to 9009694 182 CpG island CpG island 7944
Gm30567 16 9054647 to 9055420 773 + lincRNA gene predicted gene, 30567
D16Mit162 16 9062913 to 9063031 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 162
Gm49448 16 9079396 to 9137444 58048 + lincRNA gene predicted gene, 49448
Gm18722 16 9104706 to 9106942 2236 - pseudogene predicted gene, 18722
Tssr137017 16 9133175 to 9133191 16 + TSS region transcription start site region 137017
Tssr137018 16 9133265 to 9133277 12 + TSS region transcription start site region 137018
Tssr137019 16 9133295 to 9133310 15 + TSS region transcription start site region 137019
Tssr139885 16 9150855 to 9150859 4 - TSS region transcription start site region 139885
Gm49451 16 9158770 to 9162334 3564 + lincRNA gene predicted gene, 49451
Gm41418 16 9279972 to 9290565 10593 + lncRNA gene predicted gene, 41418
D16Mit109 16 9482993 to 9483122 129 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 109
Tssr139886 16 9570987 to 9570994 7 - TSS region transcription start site region 139886
Tssr139887 16 9571969 to 9571970 1 - TSS region transcription start site region 139887
Grin2a 16 9577039 to 9996500 419461 - protein coding gene glutamate receptor, ionotropic, NMDA2A (epsilon 1)
D16Mit87 16 9812751 to 9812884 133 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 87
Gm19143 16 9819893 to 9820568 675 + pseudogene predicted gene, 19143
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a