Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:58007363-61107371

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49575 16 57811487 to 58042341 230854 + lincRNA gene predicted gene, 49575
Tssr141611 16 58082950 to 58082984 34 - TSS region transcription start site region 141611
Gm41463 16 58147018 to 58148684 1666 - lncRNA gene predicted gene, 41463
Gm49574 16 58238104 to 58249239 11135 + lincRNA gene predicted gene, 49574
Gm37825 16 58316785 to 58319071 2286 - unclassified gene predicted gene, 37825
D16Ium46 16 58398264 to 58398478 214 DNA segment DNA segment, Chr 16, Indiana University Medical 46
4930461C15Rik 16 58404878 to 58408276 3398 - lincRNA gene RIKEN cDNA 4930461C15 gene
Cpgi8341 16 58408060 to 58409364 1304 CpG island CpG island 8341
Tssr141612 16 58408318 to 58408327 9 - TSS region transcription start site region 141612
Dcbld2 16 58408443 to 58469727 61284 + protein coding gene discoidin, CUB and LCCL domain containing 2
Tssr138849 16 58408481 to 58408523 42 + TSS region transcription start site region 138849
Tssr141613 16 58415315 to 58415327 12 - TSS region transcription start site region 141613
Tssr138850 16 58415474 to 58415483 9 + TSS region transcription start site region 138850
Tssr138851 16 58415598 to 58415607 9 + TSS region transcription start site region 138851
D16Ertd88e 16 58417289 to 58417503 214 DNA segment DNA segment, Chr 16, ERATO Doi 88, expressed
Tssr138852 16 58436582 to 58436598 16 + TSS region transcription start site region 138852
Tssr138853 16 58458323 to 58458364 41 + TSS region transcription start site region 138853
Tssr138854 16 58461806 to 58461820 14 + TSS region transcription start site region 138854
Tssr138855 16 58465486 to 58465487 1 + TSS region transcription start site region 138855
Tssr138856 16 58466278 to 58466281 3 + TSS region transcription start site region 138856
St3gal6 16 58469742 to 58524253 54511 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gm33475 16 58475952 to 58483165 7213 + lncRNA gene predicted gene, 33475
Tssr141614 16 58479174 to 58479186 12 - TSS region transcription start site region 141614
Tssr138857 16 58498708 to 58498719 11 + TSS region transcription start site region 138857
Tssr141615 16 58499333 to 58499347 14 - TSS region transcription start site region 141615
Tssr141616 16 58499349 to 58499362 13 - TSS region transcription start site region 141616
Tssr141617 16 58499382 to 58499402 20 - TSS region transcription start site region 141617
Tssr141618 16 58499819 to 58499841 22 - TSS region transcription start site region 141618
Tssr4919 16 58499847 to 58499857 10 - TSS region transcription start site region 4919
Tssr4920 16 58499873 to 58499885 12 - TSS region transcription start site region 4920
Tssr141619 16 58507604 to 58507633 29 - TSS region transcription start site region 141619
Tssr141620 16 58507641 to 58507662 21 - TSS region transcription start site region 141620
Tssr141621 16 58507901 to 58507918 17 - TSS region transcription start site region 141621
Tssr141622 16 58515833 to 58515836 3 - TSS region transcription start site region 141622
Cpgi8342 16 58522703 to 58523711 1008 CpG island CpG island 8342
Tssr141623 16 58523302 to 58523342 40 - TSS region transcription start site region 141623
Tssr141624 16 58523349 to 58523361 12 - TSS region transcription start site region 141624
Tssr141625 16 58523496 to 58523502 6 - TSS region transcription start site region 141625
Tssr141626 16 58523504 to 58523520 16 - TSS region transcription start site region 141626
Tssr141627 16 58523522 to 58523538 16 - TSS region transcription start site region 141627
Tssr141628 16 58523541 to 58523592 51 - TSS region transcription start site region 141628
Tssr141629 16 58523614 to 58523624 10 - TSS region transcription start site region 141629
Tssr141630 16 58523716 to 58523730 14 - TSS region transcription start site region 141630
Tssr141631 16 58523758 to 58523810 52 - TSS region transcription start site region 141631
Tssr141632 16 58524164 to 58524179 15 - TSS region transcription start site region 141632
Tssr141633 16 58524187 to 58524198 11 - TSS region transcription start site region 141633
Tssr141634 16 58524214 to 58524227 13 - TSS region transcription start site region 141634
Tssr141635 16 58524239 to 58524249 10 - TSS region transcription start site region 141635
Gm20942 16 58555117 to 58555705 588 - pseudogene predicted gene, 20942
Tssr141636 16 58555749 to 58555752 3 - TSS region transcription start site region 141636
Gm813 16 58613686 to 58616978 3292 - protein coding gene predicted gene 813
Tssr141637 16 58616973 to 58616979 6 - TSS region transcription start site region 141637
Tssr138858 16 58622617 to 58622632 15 + TSS region transcription start site region 138858
E330017A01Rik 16 58635262 to 58638403 3141 - protein coding gene RIKEN cDNA E330017A01 gene
Tssr141638 16 58638391 to 58638410 19 - TSS region transcription start site region 141638
Gm49701 16 58651490 to 58655244 3754 - lincRNA gene predicted gene, 49701
Gm41464 16 58657478 to 58662146 4668 - lncRNA gene predicted gene, 41464
Tssr138859 16 58662094 to 58662112 18 + TSS region transcription start site region 138859
Cpgi8343 16 58669953 to 58670996 1043 CpG island CpG island 8343
Tssr138860 16 58670050 to 58670090 40 + TSS region transcription start site region 138860
Cpox 16 58670208 to 58680391 10183 + protein coding gene coproporphyrinogen oxidase
Tssr138861 16 58670235 to 58670246 11 + TSS region transcription start site region 138861
Tssr138862 16 58670262 to 58670362 100 + TSS region transcription start site region 138862
Tssr138863 16 58670367 to 58670374 7 + TSS region transcription start site region 138863
Tssr138864 16 58670506 to 58670555 49 + TSS region transcription start site region 138864
Tssr138865 16 58670741 to 58670764 23 + TSS region transcription start site region 138865
Tssr138866 16 58677785 to 58677825 40 + TSS region transcription start site region 138866
Tssr138867 16 58677833 to 58677844 11 + TSS region transcription start site region 138867
Tssr138868 16 58679702 to 58679723 21 + TSS region transcription start site region 138868
Gpr15 16 58717435 to 58718724 1289 - protein coding gene G protein-coupled receptor 15
Tssr141639 16 58718769 to 58718783 14 - TSS region transcription start site region 141639
Tssr141640 16 58718865 to 58718891 26 - TSS region transcription start site region 141640
Tssr138869 16 58726339 to 58726349 10 + TSS region transcription start site region 138869
Tssr138870 16 58726369 to 58726375 6 + TSS region transcription start site region 138870
Cpgi8344 16 58727818 to 58728640 822 CpG island CpG island 8344
Cldnd1 16 58727910 to 58734247 6337 + protein coding gene claudin domain containing 1
Tssr138871 16 58727997 to 58728059 62 + TSS region transcription start site region 138871
Tssr138872 16 58733770 to 58733788 18 + TSS region transcription start site region 138872
Gm27564 16 58749589 to 58749684 95 - miRNA gene predicted gene, 27564
Gm26019 16 58751478 to 58751596 118 - snoRNA gene predicted gene, 26019
Olfr172 16 58760152 to 58761240 1088 - protein coding gene olfactory receptor 172
D16Ium60 16 58762983 to 58763137 154 DNA segment DNA segment, Chr 16, Indiana University Medical 60
Olfr173 16 58796779 to 58797942 1163 - protein coding gene olfactory receptor 173
Olfr175-ps1 16 58823781 to 58826761 2980 - protein coding gene olfactory receptor 175, pseudogene 1
Olfr177 16 58872219 to 58874669 2450 - protein coding gene olfactory receptor 177
Olfr178 16 58889259 to 58890218 959 - protein coding gene olfactory receptor 178
Olfr180 16 58915686 to 58918486 2800 - protein coding gene olfactory receptor 180
Olfr181 16 58925557 to 58928644 3087 - protein coding gene olfactory receptor 181
Olfr182-ps1 16 58960100 to 58960883 783 - pseudogene olfactory receptor 182, pseudogene 1
Gm45071 16 58960203 to 58960773 570 + pseudogene predicted gene 45071
Olfr183 16 58995357 to 59001441 6084 + protein coding gene olfactory receptor 183
Olfr184-ps1 16 59006586 to 59007417 831 - pseudogene olfactory receptor 184, pseudogene 1
Olfr185-ps1 16 59022096 to 59022863 767 - pseudogene olfactory receptor 185, pseudogene 1
Olfr186 16 59026976 to 59027905 929 - protein coding gene olfactory receptor 186
Olfr187 16 59035780 to 59039749 3969 - protein coding gene olfactory receptor 187
Olfr188-ps1 16 59050386 to 59051295 909 - pseudogene olfactory receptor 188, pseudogene 1
Olfr189-ps1 16 59063611 to 59064093 482 - pseudogene olfactory receptor 189, pseudogene 1
Olfr190 16 59074155 to 59075078 923 - protein coding gene olfactory receptor 190
Olfr191 16 59085552 to 59086481 929 - protein coding gene olfactory receptor 191
Olfr192 16 59098066 to 59098990 924 - polymorphic pseudogene olfactory receptor 192
Olfr193 16 59109679 to 59110608 929 - protein coding gene olfactory receptor 193
Olfr194 16 59119148 to 59120068 920 - protein coding gene olfactory receptor 194
Olfr195 16 59148852 to 59149778 926 + protein coding gene olfactory receptor 195
Olfr196 16 59166647 to 59170454 3807 - protein coding gene olfactory receptor 196
Tssr141641 16 59171305 to 59171341 36 - TSS region transcription start site region 141641
Olfr197 16 59185556 to 59186481 925 - polymorphic pseudogene olfactory receptor 197
Olfr198 16 59201504 to 59203522 2018 - protein coding gene olfactory receptor 198
Olfr199 16 59215685 to 59216611 926 - protein coding gene olfactory receptor 199
Olfr200-ps1 16 59255128 to 59255664 536 - pseudogene olfactory receptor 200, pseudogene 1
Olfr201 16 59268739 to 59269665 926 - protein coding gene olfactory receptor 201
Olfr202 16 59283572 to 59284495 923 - protein coding gene olfactory receptor 202
Olfr203 16 59303155 to 59304075 920 + protein coding gene olfactory receptor 203
Olfr204 16 59314488 to 59315405 917 - protein coding gene olfactory receptor 204
Olfr205 16 59328590 to 59329507 917 - protein coding gene olfactory receptor 205
Olfr206 16 59344779 to 59345699 920 - protein coding gene olfactory receptor 206
Olfr209 16 59361224 to 59362240 1016 - protein coding gene olfactory receptor 209
Gm33611 16 59405026 to 59406161 1135 + lncRNA gene predicted gene, 33611
Gabrr3 16 59407382 to 59461739 54357 + protein coding gene gamma-aminobutyric acid (GABA) receptor, rho 3
Orai2-ps 16 59457584 to 59460790 3206 + pseudogene ORAI calcium release-activated calcium modulator 2, pseudogene
Tssr138873 16 59457605 to 59457627 22 + TSS region transcription start site region 138873
1700022E09Rik 16 59466872 to 59469238 2366 - lincRNA gene RIKEN cDNA 1700022E09 gene
Cpgi8345 16 59471644 to 59472257 613 CpG island CpG island 8345
Riox2 16 59471775 to 59492461 20686 + protein coding gene ribosomal oxygenase 2
Tssr138874 16 59471778 to 59471861 83 + TSS region transcription start site region 138874
Tssr4921 16 59471863 to 59471875 12 + TSS region transcription start site region 4921
Crybg3 16 59490775 to 59600979 110204 - protein coding gene beta-gamma crystallin domain containing 3
Tssr141642 16 59492447 to 59492449 2 - TSS region transcription start site region 141642
Tssr141643 16 59495770 to 59495780 10 - TSS region transcription start site region 141643
Tssr4922 16 59505825 to 59505827 2 + TSS region transcription start site region 4922
Tssr138875 16 59538730 to 59538731 1 + TSS region transcription start site region 138875
Tssr141644 16 59557363 to 59557371 8 - TSS region transcription start site region 141644
Tssr141645 16 59557373 to 59557380 7 - TSS region transcription start site region 141645
Tssr141646 16 59557388 to 59557398 10 - TSS region transcription start site region 141646
Tssr141647 16 59557402 to 59557441 39 - TSS region transcription start site region 141647
Tssr4923 16 59557489 to 59557504 15 + TSS region transcription start site region 4923
Tssr4924 16 59559216 to 59559222 6 + TSS region transcription start site region 4924
Tssr141648 16 59600144 to 59600148 4 - TSS region transcription start site region 141648
Cpgi8346 16 59600354 to 59601475 1121 CpG island CpG island 8346
Tssr141649 16 59600979 to 59601059 80 - TSS region transcription start site region 141649
Arl6 16 59613321 to 59639411 26090 - protein coding gene ADP-ribosylation factor-like 6
A930013N22Rik 16 59615992 to 59616902 910 unclassified gene RIKEN cDNA A930013N22 gene
Tssr141650 16 59632525 to 59632541 16 - TSS region transcription start site region 141650
Tssr141651 16 59632550 to 59632555 5 - TSS region transcription start site region 141651
Tssr141652 16 59632569 to 59632583 14 - TSS region transcription start site region 141652
Tssr138876 16 59636941 to 59636949 8 + TSS region transcription start site region 138876
4930547E14Rik 16 59636945 to 59672993 36048 + lncRNA gene RIKEN cDNA 4930547E14 gene
Cpgi8347 16 59638692 to 59639598 906 CpG island CpG island 8347
Tssr141653 16 59639124 to 59639191 67 - TSS region transcription start site region 141653
Tssr138877 16 59639193 to 59639211 18 + TSS region transcription start site region 138877
Tssr141654 16 59639382 to 59639445 63 - TSS region transcription start site region 141654
9330168O09Rik 16 59642028 to 59646309 4281 unclassified gene RIKEN cDNA 9330168O09 gene
Epha6 16 59653483 to 60605531 952048 - protein coding gene Eph receptor A6
Tssr138878 16 60042349 to 60042351 2 + TSS region transcription start site region 138878
D16Mit92 16 60187187 to 60187335 148 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 92
Gm24755 16 60369054 to 60369163 109 - miRNA gene predicted gene, 24755
Gm4660 16 60397920 to 60398322 402 - pseudogene predicted gene 4660
D16Mit185.2 16 60476833 to 60476989 156 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 185.2
D16Mit185 16 60476985 to 60477070 85 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 185
D16Mit148 16 60490378 to 60490482 104 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 148
Gm9017 16 60604766 to 60611236 6470 + antisense lncRNA gene predicted gene 9017
Cpgi8348 16 60604937 to 60606609 1672 CpG island CpG island 8348
Tssr141655 16 60605226 to 60605229 3 - TSS region transcription start site region 141655
Tssr141656 16 60605243 to 60605254 11 - TSS region transcription start site region 141656
Tssr141657 16 60605271 to 60605291 20 - TSS region transcription start site region 141657
Tssr141658 16 60605545 to 60605559 14 - TSS region transcription start site region 141658
Tssr141659 16 60605591 to 60605609 18 - TSS region transcription start site region 141659
Tssr141660 16 60605611 to 60605643 32 - TSS region transcription start site region 141660
Tssr141661 16 60606467 to 60606487 20 - TSS region transcription start site region 141661
Tssr141662 16 60606488 to 60606517 29 - TSS region transcription start site region 141662
Gm27001 16 60628608 to 60629543 935 + pseudogene predicted gene, 27001
Gm49609 16 60636432 to 60636586 154 - pseudogene predicted gene, 49609
Gm27784 16 60699179 to 60699291 112 - miRNA gene predicted gene, 27784
D16Mit77 16 60880607 to 60880744 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 77
Tssr141663 16 61056367 to 61056380 13 - TSS region transcription start site region 141663
Tssr4925 16 61056392 to 61056402 10 - TSS region transcription start site region 4925
Gm17065 16 61058761 to 61058999 238 + pseudogene predicted gene 17065
Gm23852 16 61070018 to 61070094 76 + snoRNA gene predicted gene, 23852
Gm17054 16 61105150 to 61105408 258 + pseudogene predicted gene 17054