Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:57468538-58531023

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ipng3 16 22956502 to 57773713 34817211 QTL imprinted postnatal growth 3
Cmss1 16 57302000 to 57606864 304864 - protein coding gene cms small ribosomal subunit 1
Filip1l 16 57353277 to 57572804 219527 + protein coding gene filamin A interacting protein 1-like
Tssr138836 16 57471335 to 57471348 13 + TSS region transcription start site region 138836
Tssr138837 16 57498171 to 57498175 4 + TSS region transcription start site region 138837
Cpgi8337 16 57548964 to 57549555 591 CpG island CpG island 8337
Tssr138838 16 57549205 to 57549217 12 + TSS region transcription start site region 138838
Tssr138839 16 57549232 to 57549264 32 + TSS region transcription start site region 138839
Gm45967 16 57561428 to 57599987 38559 - lncRNA gene predicted gene, 45967
Tssr138840 16 57569702 to 57569724 22 + TSS region transcription start site region 138840
Tssr138841 16 57569765 to 57569779 14 + TSS region transcription start site region 138841
Tssr138842 16 57569852 to 57569866 14 + TSS region transcription start site region 138842
Tssr138843 16 57570670 to 57570691 21 + TSS region transcription start site region 138843
Tssr138844 16 57572051 to 57572076 25 + TSS region transcription start site region 138844
Tssr138845 16 57572166 to 57572179 13 + TSS region transcription start site region 138845
Tssr138846 16 57572270 to 57572297 27 + TSS region transcription start site region 138846
Tssr138847 16 57572304 to 57572332 28 + TSS region transcription start site region 138847
Tssr138848 16 57572333 to 57572349 16 + TSS region transcription start site region 138848
Cpgi8338 16 57606381 to 57607271 890 CpG island CpG island 8338
Tssr141607 16 57606796 to 57606811 15 - TSS region transcription start site region 141607
Tssr141608 16 57606816 to 57606879 63 - TSS region transcription start site region 141608
Col8a1 16 57624258 to 57754737 130479 - protein coding gene collagen, type VIII, alpha 1
Tssr141609 16 57645076 to 57645080 4 - TSS region transcription start site region 141609
Cpgi8339 16 57696410 to 57696653 243 CpG island CpG island 8339
Cpgi8340 16 57754679 to 57754837 158 CpG island CpG island 8340
Tssr141610 16 57754707 to 57754724 17 - TSS region transcription start site region 141610
Gm49577 16 57761481 to 57762158 677 - pseudogene predicted gene, 49577
Gm5674 16 57768778 to 57769248 470 - pseudogene predicted gene 5674
Pcd4ts3 16 57773560 to 57773713 153 QTL p-glycoprotein positive CD4 T cell subset 3
D16Mit5 16 57773560 to 57773713 153 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 5
Gm49575 16 57811487 to 58042341 230854 + lincRNA gene predicted gene, 49575
Gm24039 16 57884008 to 57884139 131 - snoRNA gene predicted gene, 24039
Tssr4918 16 57888059 to 57888062 3 + TSS region transcription start site region 4918
Rpl7a-ps4 16 57896806 to 57897597 791 - pseudogene ribosomal protein 7A, pseudogene 4
Gm37458 16 57902933 to 57903342 409 + unclassified gene predicted gene, 37458
Gm49576 16 57993538 to 58006023 12485 - lincRNA gene predicted gene, 49576
Tssr141611 16 58082950 to 58082984 34 - TSS region transcription start site region 141611
Gm41463 16 58147018 to 58148684 1666 - lncRNA gene predicted gene, 41463
Gm49574 16 58238104 to 58249239 11135 + lincRNA gene predicted gene, 49574
Gm37825 16 58316785 to 58319071 2286 - unclassified gene predicted gene, 37825
D16Ium46 16 58398264 to 58398478 214 DNA segment DNA segment, Chr 16, Indiana University Medical 46
4930461C15Rik 16 58404878 to 58408276 3398 - lincRNA gene RIKEN cDNA 4930461C15 gene
Cpgi8341 16 58408060 to 58409364 1304 CpG island CpG island 8341
Tssr141612 16 58408318 to 58408327 9 - TSS region transcription start site region 141612
Dcbld2 16 58408443 to 58469727 61284 + protein coding gene discoidin, CUB and LCCL domain containing 2
Tssr138849 16 58408481 to 58408523 42 + TSS region transcription start site region 138849
Tssr141613 16 58415315 to 58415327 12 - TSS region transcription start site region 141613
Tssr138850 16 58415474 to 58415483 9 + TSS region transcription start site region 138850
Tssr138851 16 58415598 to 58415607 9 + TSS region transcription start site region 138851
D16Ertd88e 16 58417289 to 58417503 214 DNA segment DNA segment, Chr 16, ERATO Doi 88, expressed
Tssr138852 16 58436582 to 58436598 16 + TSS region transcription start site region 138852
Tssr138853 16 58458323 to 58458364 41 + TSS region transcription start site region 138853
Tssr138854 16 58461806 to 58461820 14 + TSS region transcription start site region 138854
Tssr138855 16 58465486 to 58465487 1 + TSS region transcription start site region 138855
Tssr138856 16 58466278 to 58466281 3 + TSS region transcription start site region 138856
St3gal6 16 58469742 to 58524253 54511 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gm33475 16 58475952 to 58483165 7213 + lncRNA gene predicted gene, 33475
Tssr141614 16 58479174 to 58479186 12 - TSS region transcription start site region 141614
Tssr138857 16 58498708 to 58498719 11 + TSS region transcription start site region 138857
Tssr141615 16 58499333 to 58499347 14 - TSS region transcription start site region 141615
Tssr141616 16 58499349 to 58499362 13 - TSS region transcription start site region 141616
Tssr141617 16 58499382 to 58499402 20 - TSS region transcription start site region 141617
Tssr141618 16 58499819 to 58499841 22 - TSS region transcription start site region 141618
Tssr4919 16 58499847 to 58499857 10 - TSS region transcription start site region 4919
Tssr4920 16 58499873 to 58499885 12 - TSS region transcription start site region 4920
Tssr141619 16 58507604 to 58507633 29 - TSS region transcription start site region 141619
Tssr141620 16 58507641 to 58507662 21 - TSS region transcription start site region 141620
Tssr141621 16 58507901 to 58507918 17 - TSS region transcription start site region 141621
Tssr141622 16 58515833 to 58515836 3 - TSS region transcription start site region 141622
Cpgi8342 16 58522703 to 58523711 1008 CpG island CpG island 8342
Tssr141623 16 58523302 to 58523342 40 - TSS region transcription start site region 141623
Tssr141624 16 58523349 to 58523361 12 - TSS region transcription start site region 141624
Tssr141625 16 58523496 to 58523502 6 - TSS region transcription start site region 141625
Tssr141626 16 58523504 to 58523520 16 - TSS region transcription start site region 141626
Tssr141627 16 58523522 to 58523538 16 - TSS region transcription start site region 141627
Tssr141628 16 58523541 to 58523592 51 - TSS region transcription start site region 141628
Tssr141629 16 58523614 to 58523624 10 - TSS region transcription start site region 141629
Tssr141630 16 58523716 to 58523730 14 - TSS region transcription start site region 141630
Tssr141631 16 58523758 to 58523810 52 - TSS region transcription start site region 141631
Tssr141632 16 58524164 to 58524179 15 - TSS region transcription start site region 141632
Tssr141633 16 58524187 to 58524198 11 - TSS region transcription start site region 141633
Tssr141634 16 58524214 to 58524227 13 - TSS region transcription start site region 141634
Tssr141635 16 58524239 to 58524249 10 - TSS region transcription start site region 141635