Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:41360584-43320591

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Mit38 16 41393834 to 41394016 182 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 38
D16Mit38.1 16 41393955 to 41394076 121 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 38.1
Gm28750 16 41413166 to 41431092 17926 - antisense lncRNA gene predicted gene 28750
Lsamp 16 41532779 to 42181679 648900 + protein coding gene limbic system-associated membrane protein
Tssr138442 16 41532851 to 41532865 14 + TSS region transcription start site region 138442
Tssr138443 16 41532913 to 41532972 59 + TSS region transcription start site region 138443
Tssr138444 16 41532999 to 41533069 70 + TSS region transcription start site region 138444
Cpgi8272 16 41533010 to 41533628 618 CpG island CpG island 8272
Tssr138445 16 41533075 to 41533093 18 + TSS region transcription start site region 138445
Tssr138446 16 41533140 to 41533151 11 + TSS region transcription start site region 138446
Tssr138447 16 41533302 to 41533325 23 + TSS region transcription start site region 138447
Tssr138448 16 41533328 to 41533360 32 + TSS region transcription start site region 138448
Tssr138449 16 41556853 to 41556858 5 + TSS region transcription start site region 138449
Tssr138450 16 41564728 to 41564733 5 + TSS region transcription start site region 138450
Tssr138451 16 41640001 to 41640013 12 + TSS region transcription start site region 138451
Tssr138452 16 41666309 to 41666320 11 + TSS region transcription start site region 138452
Tssr138453 16 41680966 to 41680971 5 + TSS region transcription start site region 138453
Tssr138454 16 41801853 to 41801854 1 + TSS region transcription start site region 138454
Tssr138455 16 41830533 to 41830536 3 + TSS region transcription start site region 138455
Gm46551 16 41832199 to 41841980 9781 - lncRNA gene predicted gene, 46551
Tssr138456 16 41974741 to 41974757 16 + TSS region transcription start site region 138456
Tssr138457 16 41988451 to 41988469 18 + TSS region transcription start site region 138457
Tssr138458 16 42149188 to 42149192 4 + TSS region transcription start site region 138458
Tssr138459 16 42166751 to 42166754 3 + TSS region transcription start site region 138459
Tssr138460 16 42180449 to 42180454 5 + TSS region transcription start site region 138460
Gm49737 16 42184772 to 42184917 145 - pseudogene predicted gene, 49737
Cpgi8273 16 42190180 to 42190657 477 CpG island CpG island 8273
Gm49738 16 42196691 to 42197402 711 - pseudogene predicted gene, 49738
Gap43 16 42248552 to 42340651 92099 - protein coding gene growth associated protein 43
Tssr141129 16 42249059 to 42249072 13 - TSS region transcription start site region 141129
Tssr138461 16 42258107 to 42258149 42 + TSS region transcription start site region 138461
Tssr141130 16 42290972 to 42290977 5 - TSS region transcription start site region 141130
Tssr141131 16 42292138 to 42292153 15 - TSS region transcription start site region 141131
Mir6540 16 42303362 to 42303469 107 - miRNA gene microRNA 6540
Cpgi8274 16 42313583 to 42313908 325 CpG island CpG island 8274
Tssr141132 16 42340504 to 42340564 60 - TSS region transcription start site region 141132
Tssr141133 16 42340584 to 42340591 7 - TSS region transcription start site region 141133
Tssr141134 16 42340595 to 42340630 35 - TSS region transcription start site region 141134
Tssr141135 16 42340696 to 42340723 27 - TSS region transcription start site region 141135
Tssr4876 16 42350386 to 42350387 1 + TSS region transcription start site region 4876
D16Mit125 16 42377454 to 42377603 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 125
Diobq 16 42377454 to 82534286 40156832 QTL diet-induced obesity QTL
D16Mit137 16 42482762 to 42482880 118 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 137
4930429N05Rik 16 42493228 to 42495139 1911 unclassified gene RIKEN cDNA 4930429N05 gene
5430434N17Rik 16 42509461 to 42510878 1417 unclassified gene RIKEN cDNA 5430434N17 gene
Gm29960 16 42641864 to 42652620 10756 - lncRNA gene predicted gene, 29960
Gm49739 16 42663926 to 42664135 209 + pseudogene predicted gene, 49739
4932412D23Rik 16 42725702 to 42875762 150060 - lincRNA gene RIKEN cDNA 4932412D23 gene
Tssr138462 16 42750763 to 42750764 1 + TSS region transcription start site region 138462
D16Mit83 16 42808595 to 42808785 190 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 83
D16Mit41 16 42871889 to 42872019 130 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 41
Cpgi8275 16 42874877 to 42876712 1835 CpG island CpG island 8275
Tssr141136 16 42875714 to 42875757 43 - TSS region transcription start site region 141136
Tssr138463 16 42875805 to 42875827 22 + TSS region transcription start site region 138463
Tssr138464 16 42875839 to 42875861 22 + TSS region transcription start site region 138464
Zbtb20 16 42875881 to 43642602 766721 + protein coding gene zinc finger and BTB domain containing 20
Tssr138465 16 42875882 to 42875903 21 + TSS region transcription start site region 138465
Gm19522 16 42884370 to 42912065 27695 - antisense lncRNA gene predicted gene, 19522
Tssr138466 16 42907441 to 42907478 37 + TSS region transcription start site region 138466
Tssr138467 16 42907543 to 42907562 19 + TSS region transcription start site region 138467
Tssr138468 16 42907563 to 42907684 121 + TSS region transcription start site region 138468
Tssr138469 16 42908601 to 42908621 20 + TSS region transcription start site region 138469
Tssr141137 16 42912078 to 42912089 11 - TSS region transcription start site region 141137
Tssr138470 16 42921790 to 42921795 5 + TSS region transcription start site region 138470
Tssr138471 16 42921846 to 42921856 10 + TSS region transcription start site region 138471
Tssr138472 16 42921861 to 42921868 7 + TSS region transcription start site region 138472
Tssr138473 16 42925930 to 42925936 6 + TSS region transcription start site region 138473
Tssr138474 16 42930949 to 42930970 21 + TSS region transcription start site region 138474
Tssr138475 16 42947905 to 42947908 3 + TSS region transcription start site region 138475
Tssr138476 16 42955555 to 42955565 10 + TSS region transcription start site region 138476
Tssr4877 16 42955574 to 42955585 11 + TSS region transcription start site region 4877
Tssr138477 16 42955590 to 42955608 18 + TSS region transcription start site region 138477
BC002163 16 42955631 to 42955949 318 + pseudogene cDNA sequence BC002163
D16Mit40 16 42998528 to 42998682 154 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 40
Tssr138478 16 43072166 to 43072172 6 + TSS region transcription start site region 138478
Tssr138479 16 43072194 to 43072209 15 + TSS region transcription start site region 138479
Tssr138480 16 43072222 to 43072233 11 + TSS region transcription start site region 138480
Gm25873 16 43126233 to 43126339 106 + snRNA gene predicted gene, 25873
Tssr138481 16 43176797 to 43176803 6 + TSS region transcription start site region 138481
Gm15712 16 43184579 to 43185728 1149 + pseudogene predicted gene 15712
Tssr138482 16 43230733 to 43230771 38 + TSS region transcription start site region 138482
Tssr138483 16 43235856 to 43235876 20 + TSS region transcription start site region 138483
Tssr138484 16 43235924 to 43235937 13 + TSS region transcription start site region 138484
Tssr4878 16 43235953 to 43235963 10 + TSS region transcription start site region 4878
Tssr138485 16 43235975 to 43235986 11 + TSS region transcription start site region 138485
Tssr138486 16 43236020 to 43236041 21 + TSS region transcription start site region 138486
Tssr138487 16 43247278 to 43247309 31 + TSS region transcription start site region 138487
Tssr138488 16 43253701 to 43253704 3 + TSS region transcription start site region 138488
Tssr138489 16 43299314 to 43299324 10 + TSS region transcription start site region 138489
Tssr138490 16 43302393 to 43302406 13 + TSS region transcription start site region 138490
Gm37946 16 43307935 to 43308281 346 - unclassified gene predicted gene, 37946
Gm15711 16 43312594 to 43313128 534 + pseudogene predicted gene 15711