Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38480049-38720061

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd80 16 38457431 to 38495958 38527 + protein coding gene CD80 antigen
Gm41453 16 38479749 to 38482631 2882 - lncRNA gene predicted gene, 41453
Cpgi8261 16 38483136 to 38483810 674 CpG island CpG island 8261
Tssr138392 16 38483171 to 38483185 14 + TSS region transcription start site region 138392
Ck-ps3 16 38483182 to 38484596 1414 + pseudogene creatine kinase pseudogene 3
Cpgi8262 16 38484108 to 38484511 403 CpG island CpG island 8262
Timmdc1 16 38498347 to 38522663 24316 - protein coding gene translocase of inner mitochondrial membrane domain containing 1
Gm15953 16 38512567 to 38514294 1727 + pseudogene predicted gene 15953
Cpgi8263 16 38522157 to 38523091 934 CpG island CpG island 8263
Tssr141083 16 38522587 to 38522652 65 - TSS region transcription start site region 141083
Tssr141084 16 38522662 to 38522683 21 - TSS region transcription start site region 141084
Tssr138393 16 38522779 to 38522801 22 + TSS region transcription start site region 138393
Poglut1 16 38525137 to 38550258 25121 - protein coding gene protein O-glucosyltransferase 1
9430076D03Rik 16 38527731 to 38528708 977 unclassified gene RIKEN cDNA 9430076D03 gene
Tssr141085 16 38528049 to 38528050 1 - TSS region transcription start site region 141085
C030024C20Rik 16 38533115 to 38533650 535 unclassified gene RIKEN cDNA C030024C20 gene
Cpgi8264 16 38549705 to 38550391 686 CpG island CpG island 8264
Tssr141086 16 38550142 to 38550168 26 - TSS region transcription start site region 141086
Tssr141087 16 38550173 to 38550235 62 - TSS region transcription start site region 141087
Tssr138394 16 38555744 to 38555759 15 + TSS region transcription start site region 138394
Tssr138395 16 38558664 to 38558684 20 + TSS region transcription start site region 138395
Tssr138396 16 38558690 to 38558737 47 + TSS region transcription start site region 138396
Tmem39a 16 38558698 to 38592162 33464 + protein coding gene transmembrane protein 39a
Cpgi8265 16 38562644 to 38563333 689 CpG island CpG island 8265
Tssr141088 16 38562714 to 38562753 39 - TSS region transcription start site region 141088
Tssr138397 16 38562806 to 38562819 13 + TSS region transcription start site region 138397
Tssr138398 16 38562821 to 38562861 40 + TSS region transcription start site region 138398
Tssr138399 16 38562870 to 38562875 5 + TSS region transcription start site region 138399
Tssr138400 16 38562876 to 38562886 10 + TSS region transcription start site region 138400
Tssr138401 16 38562902 to 38562913 11 + TSS region transcription start site region 138401
Tssr138402 16 38564219 to 38564257 38 + TSS region transcription start site region 138402
Gm17103 16 38569323 to 38573300 3977 - antisense lncRNA gene predicted gene 17103
Tssr138403 16 38585358 to 38585375 17 + TSS region transcription start site region 138403
Tssr138404 16 38585380 to 38585391 11 + TSS region transcription start site region 138404
Arhgap31 16 38598343 to 38713035 114692 - protein coding gene Rho GTPase activating protein 31
Tssr141089 16 38600049 to 38600061 12 - TSS region transcription start site region 141089
Tssr141090 16 38602656 to 38602698 42 - TSS region transcription start site region 141090
Cpgi8266 16 38608971 to 38609311 340 CpG island CpG island 8266
D16Ium68 16 38612538 to 38612708 170 DNA segment DNA segment, Chr 16, Indiana University Medical 68
Gm36482 16 38614651 to 38653040 38389 + lncRNA gene predicted gene, 36482
Tssr141091 16 38622347 to 38622363 16 - TSS region transcription start site region 141091
Tssr141092 16 38622366 to 38622384 18 - TSS region transcription start site region 141092
Tssr141093 16 38636920 to 38636954 34 - TSS region transcription start site region 141093
Tssr138405 16 38651329 to 38651332 3 + TSS region transcription start site region 138405
Tssr138406 16 38661710 to 38661715 5 + TSS region transcription start site region 138406
Cpgi8267 16 38673578 to 38673772 194 CpG island CpG island 8267
Tssr141094 16 38678407 to 38678418 11 - TSS region transcription start site region 141094
Gm15530 16 38685315 to 38685869 554 - pseudogene predicted gene 15530
Tssr141095 16 38703684 to 38703693 9 - TSS region transcription start site region 141095
Tssr141096 16 38705820 to 38705824 4 - TSS region transcription start site region 141096
Tssr141097 16 38709708 to 38709718 10 - TSS region transcription start site region 141097
D16Mit90 16 38710883 to 38710979 96 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 90
Tssr138407 16 38712174 to 38712178 4 + TSS region transcription start site region 138407
Tssr138408 16 38712297 to 38712314 17 + TSS region transcription start site region 138408
Cpgi8268 16 38712337 to 38713623 1286 CpG island CpG island 8268
Tssr138409 16 38712451 to 38712454 3 + TSS region transcription start site region 138409
Tssr141098 16 38712734 to 38712745 11 - TSS region transcription start site region 141098
Tssr141099 16 38712828 to 38712839 11 - TSS region transcription start site region 141099
Tssr141100 16 38712842 to 38712860 18 - TSS region transcription start site region 141100
Tssr141101 16 38712862 to 38712903 41 - TSS region transcription start site region 141101
Tssr141102 16 38712924 to 38712937 13 - TSS region transcription start site region 141102
Tssr141103 16 38712947 to 38712978 31 - TSS region transcription start site region 141103
Tssr138410 16 38712958 to 38712962 4 + TSS region transcription start site region 138410
Tssr4875 16 38712995 to 38712997 2 - TSS region transcription start site region 4875
Tssr141104 16 38713005 to 38713016 11 - TSS region transcription start site region 141104
Tssr141105 16 38713068 to 38713083 15 - TSS region transcription start site region 141105
Tssr141106 16 38713207 to 38713218 11 - TSS region transcription start site region 141106
Tssr141107 16 38713235 to 38713304 69 - TSS region transcription start site region 141107
Tssr141108 16 38713323 to 38713342 19 - TSS region transcription start site region 141108
Tssr141109 16 38713354 to 38713363 9 - TSS region transcription start site region 141109
Tssr141110 16 38713391 to 38713407 16 - TSS region transcription start site region 141110
Tssr141111 16 38713428 to 38713439 11 - TSS region transcription start site region 141111
Tssr141112 16 38713461 to 38713492 31 - TSS region transcription start site region 141112