Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38139996-38350011

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gsk3b 16 38089001 to 38246080 157079 + protein coding gene glycogen synthase kinase 3 beta
Tssr138365 16 38143296 to 38143312 16 + TSS region transcription start site region 138365
Tssr138366 16 38143313 to 38143358 45 + TSS region transcription start site region 138366
Gm25617 16 38158008 to 38158139 131 + snoRNA gene predicted gene, 25617
Tssr138367 16 38177704 to 38177708 4 + TSS region transcription start site region 138367
Gm27931 16 38207463 to 38207591 128 - snoRNA gene predicted gene, 27931
Tssr138368 16 38220116 to 38220127 11 + TSS region transcription start site region 138368
Tssr138369 16 38240822 to 38240840 18 + TSS region transcription start site region 138369
Tssr138370 16 38244391 to 38244407 16 + TSS region transcription start site region 138370
Tssr138371 16 38244946 to 38244956 10 + TSS region transcription start site region 138371
Tssr138372 16 38244996 to 38245011 15 + TSS region transcription start site region 138372
Nr1i2 16 38248323 to 38294824 46501 - protein coding gene nuclear receptor subfamily 1, group I, member 2
Cpgi8253 16 38253794 to 38254370 576 CpG island CpG island 8253
Tssr141058 16 38294774 to 38294838 64 - TSS region transcription start site region 141058
Tssr141059 16 38294843 to 38294854 11 - TSS region transcription start site region 141059
Maats1 16 38297754 to 38341860 44106 - protein coding gene MYCBP-associated, testis expressed 1
Maats1os 16 38302616 to 38305020 2404 + antisense lncRNA gene MYCBP-associated, testis expressed 1, opposite strand
Cpgi8254 16 38304806 to 38304962 156 CpG island CpG island 8254
Cpgi8255 16 38306645 to 38306963 318 CpG island CpG island 8255
Cpgi8256 16 38341454 to 38341938 484 CpG island CpG island 8256
Tssr141060 16 38341813 to 38341859 46 - TSS region transcription start site region 141060
Tssr141061 16 38341864 to 38341871 7 - TSS region transcription start site region 141061
Cpgi8257 16 38346821 to 38347378 557 CpG island CpG island 8257
Tssr138373 16 38346986 to 38347050 64 + TSS region transcription start site region 138373
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138374 16 38347073 to 38347084 11 + TSS region transcription start site region 138374
Tssr138375 16 38347255 to 38347260 5 + TSS region transcription start site region 138375