Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:38044996-38445011

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930542C21Rik 16 38017323 to 38054526 37203 + lncRNA gene RIKEN cDNA 4930542C21 gene
Gm46549 16 38037651 to 38081936 44285 - lncRNA gene predicted gene, 46549
BC031361 16 38085064 to 38089260 4196 - lncRNA gene cDNA sequence BC031361
Cpgi8252 16 38088080 to 38090161 2081 CpG island CpG island 8252
Tssr141057 16 38088671 to 38088705 34 - TSS region transcription start site region 141057
Gsk3b 16 38089001 to 38246080 157079 + protein coding gene glycogen synthase kinase 3 beta
Tssr138352 16 38089041 to 38089064 23 + TSS region transcription start site region 138352
Tssr138353 16 38089071 to 38089103 32 + TSS region transcription start site region 138353
Tssr138354 16 38089114 to 38089128 14 + TSS region transcription start site region 138354
Tssr138355 16 38089325 to 38089355 30 + TSS region transcription start site region 138355
Tssr138356 16 38089361 to 38089395 34 + TSS region transcription start site region 138356
Tssr138357 16 38089481 to 38089536 55 + TSS region transcription start site region 138357
Tssr138358 16 38089792 to 38089808 16 + TSS region transcription start site region 138358
Tssr138359 16 38089961 to 38089982 21 + TSS region transcription start site region 138359
Tssr138360 16 38104532 to 38104537 5 + TSS region transcription start site region 138360
Tssr138361 16 38109734 to 38109738 4 + TSS region transcription start site region 138361
Tssr138362 16 38128540 to 38128548 8 + TSS region transcription start site region 138362
Tssr138363 16 38131999 to 38132036 37 + TSS region transcription start site region 138363
Tssr138364 16 38132050 to 38132061 11 + TSS region transcription start site region 138364
Tssr138365 16 38143296 to 38143312 16 + TSS region transcription start site region 138365
Tssr138366 16 38143313 to 38143358 45 + TSS region transcription start site region 138366
Gm25617 16 38158008 to 38158139 131 + snoRNA gene predicted gene, 25617
Tssr138367 16 38177704 to 38177708 4 + TSS region transcription start site region 138367
Gm27931 16 38207463 to 38207591 128 - snoRNA gene predicted gene, 27931
Tssr138368 16 38220116 to 38220127 11 + TSS region transcription start site region 138368
Tssr138369 16 38240822 to 38240840 18 + TSS region transcription start site region 138369
Tssr138370 16 38244391 to 38244407 16 + TSS region transcription start site region 138370
Tssr138371 16 38244946 to 38244956 10 + TSS region transcription start site region 138371
Tssr138372 16 38244996 to 38245011 15 + TSS region transcription start site region 138372
Nr1i2 16 38248323 to 38294824 46501 - protein coding gene nuclear receptor subfamily 1, group I, member 2
Cpgi8253 16 38253794 to 38254370 576 CpG island CpG island 8253
Tssr141058 16 38294774 to 38294838 64 - TSS region transcription start site region 141058
Tssr141059 16 38294843 to 38294854 11 - TSS region transcription start site region 141059
Maats1 16 38297754 to 38341860 44106 - protein coding gene MYCBP-associated, testis expressed 1
Maats1os 16 38302616 to 38305020 2404 + antisense lncRNA gene MYCBP-associated, testis expressed 1, opposite strand
Cpgi8254 16 38304806 to 38304962 156 CpG island CpG island 8254
Cpgi8255 16 38306645 to 38306963 318 CpG island CpG island 8255
Cpgi8256 16 38341454 to 38341938 484 CpG island CpG island 8256
Tssr141060 16 38341813 to 38341859 46 - TSS region transcription start site region 141060
Tssr141061 16 38341864 to 38341871 7 - TSS region transcription start site region 141061
Cpgi8257 16 38346821 to 38347378 557 CpG island CpG island 8257
Tssr138373 16 38346986 to 38347050 64 + TSS region transcription start site region 138373
Cox17 16 38346991 to 38352763 5772 + protein coding gene cytochrome c oxidase assembly protein 17, copper chaperone
Gm21987 16 38347040 to 38362297 15257 + protein coding gene predicted gene 21987
Tssr138374 16 38347073 to 38347084 11 + TSS region transcription start site region 138374
Tssr138375 16 38347255 to 38347260 5 + TSS region transcription start site region 138375
Tssr138376 16 38353098 to 38353139 41 + TSS region transcription start site region 138376
Tssr138377 16 38362164 to 38362178 14 + TSS region transcription start site region 138377
Tssr138378 16 38362179 to 38362196 17 + TSS region transcription start site region 138378
Tssr138379 16 38362205 to 38362230 25 + TSS region transcription start site region 138379
Popdc2 16 38362209 to 38378216 16007 + protein coding gene popeye domain containing 2
Tssr138380 16 38362234 to 38362251 17 + TSS region transcription start site region 138380
Tssr138381 16 38371973 to 38372006 33 + TSS region transcription start site region 138381
Cpgi8258 16 38373814 to 38374362 548 CpG island CpG island 8258
Tssr141062 16 38376847 to 38376853 6 - TSS region transcription start site region 141062
Tssr141063 16 38394297 to 38394332 35 - TSS region transcription start site region 141063
Tssr141064 16 38396048 to 38396055 7 - TSS region transcription start site region 141064
Pla1a 16 38396117 to 38433145 37028 - protein coding gene phospholipase A1 member A
Tssr141065 16 38396201 to 38396222 21 - TSS region transcription start site region 141065
Tssr4871 16 38396386 to 38396428 42 + TSS region transcription start site region 4871
Tssr4872 16 38396515 to 38396524 9 + TSS region transcription start site region 4872
Tssr4873 16 38399620 to 38399628 8 - TSS region transcription start site region 4873
Tssr141066 16 38400074 to 38400089 15 - TSS region transcription start site region 141066
Tssr4874 16 38403964 to 38403978 14 + TSS region transcription start site region 4874
Tssr141067 16 38406810 to 38406830 20 - TSS region transcription start site region 141067
Tssr141068 16 38407678 to 38407696 18 - TSS region transcription start site region 141068
Tssr141069 16 38407703 to 38407738 35 - TSS region transcription start site region 141069
Tssr141070 16 38432879 to 38432919 40 - TSS region transcription start site region 141070
Tssr141071 16 38433153 to 38433175 22 - TSS region transcription start site region 141071
Gm36333 16 38433289 to 38440683 7394 + lncRNA gene predicted gene, 36333
D16Mit59 16 38433890 to 38434074 184 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 59
Tssr138382 16 38443399 to 38443450 51 + TSS region transcription start site region 138382
Tssr141072 16 38443922 to 38443929 7 - TSS region transcription start site region 141072
Tssr138383 16 38444278 to 38444304 26 + TSS region transcription start site region 138383
Tssr138384 16 38444305 to 38444319 14 + TSS region transcription start site region 138384
D16Mit1003 16 38444629 to 38444730 101 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 1003