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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35969250-36870921

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parp9 16 35938470 to 35972605 34135 + protein coding gene poly (ADP-ribose) polymerase family, member 9
Gm15564 16 35966752 to 35983230 16478 - antisense lncRNA gene predicted gene 15564
Tssr138238 16 35972185 to 35972219 34 + TSS region transcription start site region 138238
Tssr140974 16 35981353 to 35981372 19 - TSS region transcription start site region 140974
Tssr138239 16 35981593 to 35981631 38 + TSS region transcription start site region 138239
Cpgi8232 16 35981606 to 35981761 155 CpG island CpG island 8232
Tssr140975 16 35981738 to 35981769 31 - TSS region transcription start site region 140975
Cpgi8233 16 35982846 to 35984201 1355 CpG island CpG island 8233
Tssr138240 16 35983089 to 35983106 17 + TSS region transcription start site region 138240
Tssr140976 16 35983234 to 35983269 35 - TSS region transcription start site region 140976
Tssr138241 16 35983307 to 35983395 88 + TSS region transcription start site region 138241
Kpna1 16 35983363 to 36037136 53773 + protein coding gene karyopherin (importin) alpha 1
Tssr138242 16 35983424 to 35983435 11 + TSS region transcription start site region 138242
Tssr140977 16 35983910 to 35983920 10 - TSS region transcription start site region 140977
Tssr138243 16 36026826 to 36026867 41 + TSS region transcription start site region 138243
Tssr138244 16 36034937 to 36034959 22 + TSS region transcription start site region 138244
Tssr138245 16 36035364 to 36035373 9 + TSS region transcription start site region 138245
Cpgi8234 16 36040972 to 36041672 700 CpG island CpG island 8234
Tssr138246 16 36041184 to 36041197 13 + TSS region transcription start site region 138246
Wdr5b 16 36041190 to 36042974 1784 + protein coding gene WD repeat domain 5B
Tssr138247 16 36041198 to 36041234 36 + TSS region transcription start site region 138247
Tssr138248 16 36041266 to 36041300 34 + TSS region transcription start site region 138248
Fam162a 16 36043844 to 36071515 27671 - protein coding gene family with sequence similarity 162, member A
Del(16Fam162a-Stfa2l1)1Gusa 16 36043844 to 36161948 118104 chromosomal deletion deletion, Chr 16, Guy Sauvageau 1
Tssr4864 16 36048102 to 36048106 4 - TSS region transcription start site region 4864
Cpgi8235 16 36071133 to 36072434 1301 CpG island CpG island 8235
Tssr140978 16 36071522 to 36071604 82 - TSS region transcription start site region 140978
Tssr138249 16 36071624 to 36071688 64 + TSS region transcription start site region 138249
Ccdc58 16 36071685 to 36092120 20435 + protein coding gene coiled-coil domain containing 58
Tssr140979 16 36071734 to 36071759 25 - TSS region transcription start site region 140979
Tssr138250 16 36072068 to 36072090 22 + TSS region transcription start site region 138250
Tssr140980 16 36072231 to 36072234 3 - TSS region transcription start site region 140980
Tssr4865 16 36098032 to 36098037 5 - TSS region transcription start site region 4865
Gm41450 16 36102717 to 36111131 8414 + lncRNA gene predicted gene, 41450
Tssr138251 16 36103703 to 36103710 7 + TSS region transcription start site region 138251
Csta1 16 36119946 to 36131189 11243 - protein coding gene cystatin A1
Tssr140981 16 36131089 to 36131102 13 - TSS region transcription start site region 140981
Tssr140982 16 36131156 to 36131191 35 - TSS region transcription start site region 140982
Gm10092 16 36135939 to 36137731 1792 + pseudogene predicted gene 10092
Gm23080 16 36137872 to 36137974 102 - snRNA gene predicted gene, 23080
Tssr138252 16 36156801 to 36156813 12 + TSS region transcription start site region 138252
Stfa2l1 16 36156811 to 36161948 5137 + protein coding gene stefin A2 like 1
Tssr138253 16 36160046 to 36160052 6 + TSS region transcription start site region 138253
Tssr138254 16 36160943 to 36160945 2 + TSS region transcription start site region 138254
Gm22885 16 36162015 to 36162121 106 - snRNA gene predicted gene, 22885
Tssr138255 16 36184082 to 36184095 13 + TSS region transcription start site region 138255
Cstdc4 16 36184212 to 36188111 3899 + protein coding gene cystatin domain containing 4
Gm25024 16 36188174 to 36188277 103 - snRNA gene predicted gene, 25024
Gm6815 16 36194849 to 36198129 3280 - pseudogene predicted gene 6815
Tssr138256 16 36206395 to 36206398 3 + TSS region transcription start site region 138256
Gm10913 16 36209277 to 36209739 462 + pseudogene predicted pseudogene 10913
Csta3 16 36210403 to 36217788 7385 + protein coding gene cystatin A family member 3
Gm24801 16 36217922 to 36218026 104 - snRNA gene predicted gene, 24801
Csta2 16 36221562 to 36257450 35888 + protein coding gene cystatin A family member 2
Gm10813 16 36235604 to 36235697 93 - pseudogene predicted gene 10813
Gvhd6 16 36240487 to 45690785 9450298 QTL graft-versus host disease 6
D16Mit4 16 36240487 to 36240618 131 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 4
Tssr138257 16 36252872 to 36252877 5 + TSS region transcription start site region 138257
Gm24569 16 36257510 to 36257613 103 - snRNA gene predicted gene, 24569
Tssr4866 16 36277071 to 36277073 2 + TSS region transcription start site region 4866
Tssr138258 16 36277145 to 36277182 37 + TSS region transcription start site region 138258
Stfa1 16 36277148 to 36285371 8223 + protein coding gene stefin A1
Gm23306 16 36285433 to 36285537 104 - snRNA gene predicted gene, 23306
Cstdc3 16 36305357 to 36312717 7360 + protein coding gene cystatin domain containing 3
Tssr138259 16 36307992 to 36308005 13 + TSS region transcription start site region 138259
Gm25254 16 36312793 to 36312896 103 - snRNA gene predicted gene, 25254
Gm49647 16 36319142 to 36319605 463 + pseudogene predicted gene, 49647
Gm24437 16 36321481 to 36321584 103 + snRNA gene predicted gene, 24437
Cstdc6 16 36321665 to 36334332 12667 - protein coding gene cystatin domain containing 6
Tssr140983 16 36334330 to 36334347 17 - TSS region transcription start site region 140983
Gm25465 16 36359218 to 36359322 104 + snRNA gene predicted gene, 25465
Cstdc5 16 36359382 to 36367570 8188 - protein coding gene cystatin domain containing 5
Tssr140984 16 36359497 to 36359510 13 - TSS region transcription start site region 140984
Gm15845 16 36367070 to 36387406 20336 + antisense lncRNA gene predicted gene 15845
Tssr140985 16 36367534 to 36367551 17 - TSS region transcription start site region 140985
Tssr140986 16 36367623 to 36367637 14 - TSS region transcription start site region 140986
Tssr4867 16 36367724 to 36367766 42 - TSS region transcription start site region 4867
Gm24218 16 36386190 to 36386294 104 + snRNA gene predicted gene, 24218
Gm7260 16 36387978 to 36391122 3144 - protein coding gene predicted gene 7260
Gm22349 16 36403779 to 36403885 106 + snRNA gene predicted gene, 22349
Stfa2 16 36403992 to 36408457 4465 - protein coding gene stefin A2
Tssr140987 16 36408349 to 36408362 13 - TSS region transcription start site region 140987
Tssr140988 16 36408437 to 36408463 26 - TSS region transcription start site region 140988
Gm22263 16 36419087 to 36419190 103 + snRNA gene predicted gene, 22263
Gm49652 16 36419250 to 36420921 1671 - pseudogene predicted gene, 49652
Gm25903 16 36438644 to 36438746 102 + snRNA gene predicted gene, 25903
Stfa3 16 36450537 to 36455392 4855 - protein coding gene stefin A3
Tssr140989 16 36450565 to 36450581 16 - TSS region transcription start site region 140989
Tssr140990 16 36455312 to 36455331 19 - TSS region transcription start site region 140990
Tssr140991 16 36455378 to 36455400 22 - TSS region transcription start site region 140991
Gm49653 16 36472616 to 36473841 1225 - unclassified gene predicted gene, 49653
Casr 16 36493696 to 36562141 68445 - protein coding gene calcium-sensing receptor
Cpgi8236 16 36494908 to 36495880 972 CpG island CpG island 8236
Cpgi8237 16 36509687 to 36509894 207 CpG island CpG island 8237
Gm25902 16 36512333 to 36512650 317 - unclassified non-coding RNA gene predicted gene, 25902
Tssr140992 16 36532169 to 36532184 15 - TSS region transcription start site region 140992
Tssr140993 16 36532186 to 36532213 27 - TSS region transcription start site region 140993
Tssr140994 16 36532218 to 36532235 17 - TSS region transcription start site region 140994
Tssr140995 16 36532239 to 36532261 22 - TSS region transcription start site region 140995
Cpgi8238 16 36561343 to 36562026 683 CpG island CpG island 8238
Tssr140996 16 36561541 to 36561554 13 - TSS region transcription start site region 140996
Tssr140997 16 36561601 to 36561614 13 - TSS region transcription start site region 140997
Tssr140998 16 36561749 to 36561763 14 - TSS region transcription start site region 140998
Tssr140999 16 36561786 to 36561799 13 - TSS region transcription start site region 140999
Gm49662 16 36569145 to 36598497 29352 - lincRNA gene predicted gene, 49662
Gm49664 16 36577566 to 36577715 149 - pseudogene predicted gene, 49664
Tssr4868 16 36580173 to 36580184 11 + TSS region transcription start site region 4868
Gm49663 16 36580461 to 36580714 253 + pseudogene predicted gene, 49663
Tssr141000 16 36598351 to 36598373 22 - TSS region transcription start site region 141000
Cd86 16 36603869 to 36666081 62212 - protein coding gene CD86 antigen
Tssr141001 16 36610805 to 36610816 11 - TSS region transcription start site region 141001
Tssr141002 16 36610851 to 36610875 24 - TSS region transcription start site region 141002
Tssr141003 16 36611164 to 36611165 1 - TSS region transcription start site region 141003
Tssr141004 16 36618564 to 36618575 11 - TSS region transcription start site region 141004
Tssr141005 16 36621589 to 36621600 11 - TSS region transcription start site region 141005
Tssr141006 16 36626538 to 36626551 13 - TSS region transcription start site region 141006
Tssr138260 16 36633293 to 36633331 38 + TSS region transcription start site region 138260
D16Mit11 16 36633635 to 36633808 173 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 11
Cpgi8239 16 36635374 to 36635569 195 CpG island CpG island 8239
Tssr4869 16 36642722 to 36642731 9 - TSS region transcription start site region 4869
Tssr141007 16 36642742 to 36642753 11 - TSS region transcription start site region 141007
Tssr141008 16 36642787 to 36642806 19 - TSS region transcription start site region 141008
Tssr141009 16 36649005 to 36649012 7 - TSS region transcription start site region 141009
Tssr141010 16 36656748 to 36656757 9 - TSS region transcription start site region 141010
Tssr141011 16 36656818 to 36656829 11 - TSS region transcription start site region 141011
Tssr141012 16 36666044 to 36666055 11 - TSS region transcription start site region 141012
Tssr141013 16 36666067 to 36666086 19 - TSS region transcription start site region 141013
Gm41451 16 36686337 to 36688579 2242 - lncRNA gene predicted gene, 41451
Cpgi8240 16 36693737 to 36694373 636 CpG island CpG island 8240
Tssr138261 16 36693956 to 36693965 9 + TSS region transcription start site region 138261
Tssr138262 16 36693972 to 36694000 28 + TSS region transcription start site region 138262
Ildr1 16 36693978 to 36726804 32826 + protein coding gene immunoglobulin-like domain containing receptor 1
Tssr138263 16 36694024 to 36694037 13 + TSS region transcription start site region 138263
Tssr138264 16 36694043 to 36694062 19 + TSS region transcription start site region 138264
Tssr138265 16 36708230 to 36708239 9 + TSS region transcription start site region 138265
Tssr138266 16 36708289 to 36708304 15 + TSS region transcription start site region 138266
Tssr138267 16 36708316 to 36708338 22 + TSS region transcription start site region 138267
Tssr138268 16 36708667 to 36708676 9 + TSS region transcription start site region 138268
Cpgi8241 16 36709424 to 36709724 300 CpG island CpG island 8241
Tssr138269 16 36709783 to 36709797 14 + TSS region transcription start site region 138269
Tssr138270 16 36712035 to 36712044 9 + TSS region transcription start site region 138270
Tssr138271 16 36717724 to 36717756 32 + TSS region transcription start site region 138271
Cpgi8242 16 36722111 to 36722636 525 CpG island CpG island 8242
Tssr138272 16 36722540 to 36722568 28 + TSS region transcription start site region 138272
Gm8538 16 36735587 to 36737110 1523 + pseudogene predicted gene 8538
Slc15a2 16 36750177 to 36784962 34785 - protein coding gene solute carrier family 15 (H+/peptide transporter), member 2
Tssr141014 16 36770095 to 36770098 3 - TSS region transcription start site region 141014
Tssr141015 16 36778761 to 36778765 4 - TSS region transcription start site region 141015
Gm8425 16 36778834 to 36779602 768 + pseudogene predicted gene 8425
Tssr141016 16 36784699 to 36784728 29 - TSS region transcription start site region 141016
Tssr141017 16 36784746 to 36784758 12 - TSS region transcription start site region 141017
Tssr141018 16 36784784 to 36784825 41 - TSS region transcription start site region 141018
Tssr141019 16 36784826 to 36784848 22 - TSS region transcription start site region 141019
Tssr138273 16 36784892 to 36784923 31 + TSS region transcription start site region 138273
Tssr141020 16 36784932 to 36784971 39 - TSS region transcription start site region 141020
Tssr141021 16 36784974 to 36785001 27 - TSS region transcription start site region 141021
Gm22617 16 36789738 to 36789807 69 + miRNA gene predicted gene, 22617
Eaf2 16 36792884 to 36874826 81942 - protein coding gene ELL associated factor 2
Cpgi8243 16 36827794 to 36828778 984 CpG island CpG island 8243
Tssr141022 16 36828224 to 36828269 45 - TSS region transcription start site region 141022
Tssr138274 16 36828364 to 36828434 70 + TSS region transcription start site region 138274
Iqcb1 16 36828385 to 36872721 44336 + protein coding gene IQ calmodulin-binding motif containing 1
2600002D14Rik 16 36862450 to 36862741 291 + sense intronic lncRNA gene RIKEN cDNA 2600002D14 gene