Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:35645217-35927037

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema5b 16 35541154 to 35664261 123107 + protein coding gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
Cpgi8225 16 35645400 to 35645765 365 CpG island CpG island 8225
Cpgi8226 16 35651157 to 35651821 664 CpG island CpG island 8226
Tssr140900 16 35652266 to 35652270 4 - TSS region transcription start site region 140900
Cpgi8227 16 35659549 to 35660734 1185 CpG island CpG island 8227
Tssr138221 16 35661110 to 35661112 2 + TSS region transcription start site region 138221
Mdq6 16 35694403 to 35694403 0 QTL mammary ductal QTL 6
Slc49a4 16 35694903 to 35769356 74453 - protein coding gene solute carrier family 49 member 4
Gm25967 16 35722087 to 35722233 146 - snoRNA gene predicted gene, 25967
Cpgi8228 16 35768697 to 35769636 939 CpG island CpG island 8228
Tssr140901 16 35769308 to 35769327 19 - TSS region transcription start site region 140901
Tssr140902 16 35769328 to 35769348 20 - TSS region transcription start site region 140902
Tssr140903 16 35769361 to 35769384 23 - TSS region transcription start site region 140903
Tssr140904 16 35769496 to 35769534 38 - TSS region transcription start site region 140904
Tssr140905 16 35769547 to 35769563 16 - TSS region transcription start site region 140905
Cpgi8229 16 35770072 to 35770774 702 CpG island CpG island 8229
Tssr140906 16 35770230 to 35770255 25 - TSS region transcription start site region 140906
Hspbap1 16 35770375 to 35828477 58102 + protein coding gene Hspb associated protein 1
Tssr138222 16 35770382 to 35770396 14 + TSS region transcription start site region 138222
Tssr138223 16 35770398 to 35770427 29 + TSS region transcription start site region 138223
Tssr140907 16 35771370 to 35771374 4 - TSS region transcription start site region 140907
Tssr138224 16 35775791 to 35775795 4 + TSS region transcription start site region 138224
C530005L23Rik 16 35785217 to 35787037 1820 unclassified gene RIKEN cDNA C530005L23 gene
Gm26838 16 35805947 to 35808946 2999 - antisense lncRNA gene predicted gene, 26838
Tssr138225 16 35809069 to 35809083 14 + TSS region transcription start site region 138225
Gm49728 16 35832030 to 35832261 231 - pseudogene predicted gene, 49728
Tssr140908 16 35832842 to 35832846 4 - TSS region transcription start site region 140908
Parp14 16 35832874 to 35871544 38670 - protein coding gene poly (ADP-ribose) polymerase family, member 14
Tssr140909 16 35837927 to 35837936 9 - TSS region transcription start site region 140909
Tssr140910 16 35841111 to 35841122 11 - TSS region transcription start site region 140910
Tssr140911 16 35841158 to 35841173 15 - TSS region transcription start site region 140911
Tssr140912 16 35841178 to 35841198 20 - TSS region transcription start site region 140912
Tssr140913 16 35841446 to 35841478 32 - TSS region transcription start site region 140913
Tssr140914 16 35841485 to 35841496 11 - TSS region transcription start site region 140914
Tssr140915 16 35841517 to 35841552 35 - TSS region transcription start site region 140915
Tssr140916 16 35841556 to 35841567 11 - TSS region transcription start site region 140916
Tssr140917 16 35841607 to 35841638 31 - TSS region transcription start site region 140917
Tssr140918 16 35843766 to 35843793 27 - TSS region transcription start site region 140918
Tssr140919 16 35843813 to 35843829 16 - TSS region transcription start site region 140919
Tssr140920 16 35843833 to 35843845 12 - TSS region transcription start site region 140920
Tssr140921 16 35843849 to 35843861 12 - TSS region transcription start site region 140921
Tssr140922 16 35843956 to 35843971 15 - TSS region transcription start site region 140922
Tssr140923 16 35843976 to 35843988 12 - TSS region transcription start site region 140923
Tssr140924 16 35843991 to 35844014 23 - TSS region transcription start site region 140924
Tssr140925 16 35844049 to 35844064 15 - TSS region transcription start site region 140925
Tssr140926 16 35844235 to 35844244 9 - TSS region transcription start site region 140926
Tssr140927 16 35844325 to 35844338 13 - TSS region transcription start site region 140927
Tssr140928 16 35844382 to 35844397 15 - TSS region transcription start site region 140928
Tssr140929 16 35845356 to 35845367 11 - TSS region transcription start site region 140929
Tssr140930 16 35845395 to 35845412 17 - TSS region transcription start site region 140930
Tssr140931 16 35848021 to 35848033 12 - TSS region transcription start site region 140931
Tssr140932 16 35852763 to 35852777 14 - TSS region transcription start site region 140932
Tssr140933 16 35853594 to 35853609 15 - TSS region transcription start site region 140933
Tssr140934 16 35853730 to 35853765 35 - TSS region transcription start site region 140934
Tssr140935 16 35854569 to 35854581 12 - TSS region transcription start site region 140935
Tssr140936 16 35855002 to 35855048 46 - TSS region transcription start site region 140936
Tssr140937 16 35856212 to 35856238 26 - TSS region transcription start site region 140937
Tssr140938 16 35856669 to 35856687 18 - TSS region transcription start site region 140938
Tssr138226 16 35857142 to 35857220 78 + TSS region transcription start site region 138226
Tssr140939 16 35857188 to 35857220 32 - TSS region transcription start site region 140939
Tssr140940 16 35857324 to 35857342 18 - TSS region transcription start site region 140940
Tssr140941 16 35857480 to 35857520 40 - TSS region transcription start site region 140941
Tssr140942 16 35857574 to 35857592 18 - TSS region transcription start site region 140942
Tssr140943 16 35857661 to 35857701 40 - TSS region transcription start site region 140943
Tssr140944 16 35857725 to 35857766 41 - TSS region transcription start site region 140944
Tssr140945 16 35857770 to 35857794 24 - TSS region transcription start site region 140945
Tssr140946 16 35857808 to 35857823 15 - TSS region transcription start site region 140946
Tssr140947 16 35857828 to 35857850 22 - TSS region transcription start site region 140947
Tssr140948 16 35857999 to 35858011 12 - TSS region transcription start site region 140948
Tssr140949 16 35858061 to 35858073 12 - TSS region transcription start site region 140949
Tssr140950 16 35858364 to 35858375 11 - TSS region transcription start site region 140950
Tssr140951 16 35858418 to 35858457 39 - TSS region transcription start site region 140951
Tssr140952 16 35858658 to 35858670 12 - TSS region transcription start site region 140952
Tssr140953 16 35859068 to 35859100 32 - TSS region transcription start site region 140953
Tssr140954 16 35860477 to 35860505 28 - TSS region transcription start site region 140954
Tssr140955 16 35866177 to 35866228 51 - TSS region transcription start site region 140955
Gm49730 16 35866179 to 35867951 1772 - unclassified gene predicted gene, 49730
Tssr140956 16 35866257 to 35866299 42 - TSS region transcription start site region 140956
Tssr140957 16 35869181 to 35869194 13 - TSS region transcription start site region 140957
Cpgi8230 16 35870899 to 35871396 497 CpG island CpG island 8230
Tssr140958 16 35871372 to 35871388 16 - TSS region transcription start site region 140958
Tssr138227 16 35871457 to 35871482 25 + TSS region transcription start site region 138227
Tssr138228 16 35871616 to 35871631 15 + TSS region transcription start site region 138228
Tssr140959 16 35872574 to 35872609 35 - TSS region transcription start site region 140959
Gm41467 16 35891417 to 35893173 1756 + pseudogene predicted gene, 41467
Tssr138229 16 35919396 to 35919409 13 + TSS region transcription start site region 138229
Gm10237 16 35920464 to 35920799 335 + pseudogene predicted gene 10237
Tssr138230 16 35923768 to 35923773 5 + TSS region transcription start site region 138230
Dtx3l 16 35926515 to 35939027 12512 - protein coding gene deltex 3-like, E3 ubiquitin ligase
Tssr140960 16 35926951 to 35926955 4 - TSS region transcription start site region 140960