Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:32926324-33576376

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrch3 16 32914100 to 33015647 101547 + protein coding gene leucine-rich repeats and calponin homology (CH) domain containing 3
Tssr138069 16 32930093 to 32930106 13 + TSS region transcription start site region 138069
Tssr138070 16 32930941 to 32930950 9 + TSS region transcription start site region 138070
Tssr138071 16 32973895 to 32973907 12 + TSS region transcription start site region 138071
Tssr138072 16 32975791 to 32975810 19 + TSS region transcription start site region 138072
Gm17106 16 32985854 to 33108601 122747 - unclassified non-coding RNA gene predicted gene 17106
n-R5s33 16 33001903 to 33002021 118 + rRNA gene nuclear encoded rRNA 5S 33
Iqcg 16 33014270 to 33056418 42148 - protein coding gene IQ motif containing G
Tssr140836 16 33023911 to 33023948 37 - TSS region transcription start site region 140836
Tssr140837 16 33056174 to 33056211 37 - TSS region transcription start site region 140837
Cpgi8201 16 33056260 to 33057189 929 CpG island CpG island 8201
Tssr140838 16 33056389 to 33056429 40 - TSS region transcription start site region 140838
Rpl35a 16 33056453 to 33060189 3736 + protein coding gene ribosomal protein L35A
Tssr138073 16 33056456 to 33056495 39 + TSS region transcription start site region 138073
Tssr138074 16 33056499 to 33056510 11 + TSS region transcription start site region 138074
Tssr138075 16 33056515 to 33056531 16 + TSS region transcription start site region 138075
Tssr138076 16 33056544 to 33056570 26 + TSS region transcription start site region 138076
Tssr138077 16 33057012 to 33057038 26 + TSS region transcription start site region 138077
Tssr138078 16 33057041 to 33057068 27 + TSS region transcription start site region 138078
Cpgi8202 16 33062055 to 33063205 1150 CpG island CpG island 8202
Tssr138079 16 33062512 to 33062549 37 + TSS region transcription start site region 138079
Lmln 16 33062521 to 33127695 65174 + protein coding gene leishmanolysin-like (metallopeptidase M8 family)
Gm22231 16 33068110 to 33068182 72 + miRNA gene predicted gene, 22231
Mir1947 16 33105361 to 33105445 84 + miRNA gene microRNA 1947
Gm38540 16 33114402 to 33124023 9621 - lncRNA gene predicted gene, 38540
Tssr140839 16 33124049 to 33124064 15 - TSS region transcription start site region 140839
Gm41447 16 33136013 to 33137622 1609 - lncRNA gene predicted gene, 41447
Gm23916 16 33139850 to 33140248 398 - ribozyme gene predicted gene, 23916
D16Mit37 16 33152537 to 33152786 249 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 37
Tssr4849 16 33169757 to 33169788 31 + TSS region transcription start site region 4849
Tssr138080 16 33174947 to 33174950 3 + TSS region transcription start site region 138080
Tssr138081 16 33179126 to 33179143 17 + TSS region transcription start site region 138081
Cpgi8203 16 33184881 to 33185906 1025 CpG island CpG island 8203
Tssr138082 16 33185045 to 33185153 108 + TSS region transcription start site region 138082
Osbpl11 16 33185071 to 33243312 58241 + protein coding gene oxysterol binding protein-like 11
Tssr138083 16 33185156 to 33185168 12 + TSS region transcription start site region 138083
Tssr140840 16 33186231 to 33186256 25 - TSS region transcription start site region 140840
Tssr140841 16 33186257 to 33186268 11 - TSS region transcription start site region 140841
Tssr138084 16 33207025 to 33207029 4 + TSS region transcription start site region 138084
Cpgi8204 16 33251223 to 33252437 1214 CpG island CpG island 8204
Tssr140842 16 33251307 to 33251319 12 - TSS region transcription start site region 140842
Tssr140843 16 33251324 to 33251376 52 - TSS region transcription start site region 140843
Tssr138085 16 33251415 to 33251456 41 + TSS region transcription start site region 138085
Snx4 16 33251456 to 33299562 48106 + protein coding gene sorting nexin 4
1700007L15Rik 16 33379854 to 33380727 873 - bidirectional promoter lncRNA gene RIKEN cDNA 1700007L15 gene
Cpgi8205 16 33380420 to 33381706 1286 CpG island CpG island 8205
Tssr140844 16 33380696 to 33380713 17 - TSS region transcription start site region 140844
Tssr140845 16 33380717 to 33380755 38 - TSS region transcription start site region 140845
Tssr138086 16 33380765 to 33380787 22 + TSS region transcription start site region 138086
Zfp148 16 33380775 to 33503903 123128 + protein coding gene zinc finger protein 148
Tssr138087 16 33380795 to 33380823 28 + TSS region transcription start site region 138087
Tssr138088 16 33380864 to 33380902 38 + TSS region transcription start site region 138088
Tssr138089 16 33381096 to 33381135 39 + TSS region transcription start site region 138089
Tssr138090 16 33381148 to 33381159 11 + TSS region transcription start site region 138090
Cpgi8206 16 33400224 to 33400566 342 CpG island CpG island 8206
Tssr138091 16 33497905 to 33497927 22 + TSS region transcription start site region 138091
Cpgi8207 16 33517193 to 33517570 377 CpG island CpG island 8207
Slc12a8 16 33517333 to 33664135 146802 + protein coding gene solute carrier family 12 (potassium/chloride transporters), member 8
Tssr138092 16 33518189 to 33518207 18 + TSS region transcription start site region 138092
Tssr138093 16 33518303 to 33518340 37 + TSS region transcription start site region 138093
Tssr138094 16 33518528 to 33518542 14 + TSS region transcription start site region 138094
Tssr138095 16 33518549 to 33518559 10 + TSS region transcription start site region 138095
Tssr138096 16 33523676 to 33523695 19 + TSS region transcription start site region 138096
Tssr138097 16 33523699 to 33523730 31 + TSS region transcription start site region 138097