Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:31313937-32013980

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apod 16 31296192 to 31314808 18616 - protein coding gene apolipoprotein D
Tssr140753 16 31314537 to 31314548 11 - TSS region transcription start site region 140753
Tssr140754 16 31314586 to 31314605 19 - TSS region transcription start site region 140754
D16Mit110 16 31324304 to 31324397 93 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 110
AV205837 16 31325241 to 31327154 1913 + lincRNA gene expressed sequence AV205837
Tssr137891 16 31325257 to 31325269 12 + TSS region transcription start site region 137891
Tssr137892 16 31325276 to 31325294 18 + TSS region transcription start site region 137892
Gm41443 16 31342313 to 31351259 8946 - lncRNA gene predicted gene, 41443
Gm49404 16 31344147 to 31344505 358 + pseudogene predicted gene, 49404
1700007E05Rik 16 31376506 to 31379133 2627 - pseudogene RIKEN cDNA 1700007E05 gene
Gm49736 16 31412467 to 31416491 4024 + lincRNA gene predicted gene, 49736
Tssr140755 16 31421368 to 31421378 10 - TSS region transcription start site region 140755
Tssr137893 16 31422268 to 31422278 10 + TSS region transcription start site region 137893
Tssr137894 16 31422288 to 31422308 20 + TSS region transcription start site region 137894
Bdh1 16 31422297 to 31458901 36604 + protein coding gene 3-hydroxybutyrate dehydrogenase, type 1
Tssr137895 16 31422315 to 31422347 32 + TSS region transcription start site region 137895
Gm15743 16 31427876 to 31429776 1900 - antisense lncRNA gene predicted gene 15743
Cpgi8171 16 31428474 to 31430296 1822 CpG island CpG island 8171
Tssr137896 16 31428745 to 31428755 10 + TSS region transcription start site region 137896
Tssr137897 16 31428757 to 31428762 5 + TSS region transcription start site region 137897
Tssr137898 16 31428764 to 31428837 73 + TSS region transcription start site region 137898
Tssr137899 16 31428870 to 31428881 11 + TSS region transcription start site region 137899
Tssr137900 16 31428893 to 31428902 9 + TSS region transcription start site region 137900
Tssr140756 16 31429646 to 31429691 45 - TSS region transcription start site region 140756
Tssr140757 16 31429719 to 31429741 22 - TSS region transcription start site region 140757
Tssr137901 16 31450197 to 31450210 13 + TSS region transcription start site region 137901
Tssr137902 16 31450229 to 31450238 9 + TSS region transcription start site region 137902
Tssr137903 16 31455105 to 31455117 12 + TSS region transcription start site region 137903
Tssr137904 16 31455120 to 31455134 14 + TSS region transcription start site region 137904
Tssr137905 16 31455140 to 31455160 20 + TSS region transcription start site region 137905
Tssr137906 16 31456655 to 31456680 25 + TSS region transcription start site region 137906
Gm49695 16 31469926 to 31476353 6427 + lincRNA gene predicted gene, 49695
Gm34032 16 31476082 to 31578483 102401 - lncRNA gene predicted gene, 34032
Gm46560 16 31508387 to 31511777 3390 + lincRNA gene predicted gene, 46560
Gm34256 16 31590196 to 31593220 3024 - lincRNA gene predicted gene, 34256
Gm536 16 31617868 to 31638979 21111 + lincRNA gene predicted gene 536
Cpgi8172 16 31663294 to 31664689 1395 CpG island CpG island 8172
Dlg1 16 31663443 to 31873356 209913 + protein coding gene discs large MAGUK scaffold protein 1
Tssr137907 16 31663841 to 31663912 71 + TSS region transcription start site region 137907
Tssr137908 16 31663937 to 31663980 43 + TSS region transcription start site region 137908
Tssr137909 16 31664110 to 31664118 8 + TSS region transcription start site region 137909
Tssr137910 16 31664130 to 31664178 48 + TSS region transcription start site region 137910
Tssr137911 16 31664185 to 31664188 3 + TSS region transcription start site region 137911
Gm49712 16 31679241 to 31680609 1368 + unclassified gene predicted gene, 49712
Tssr137912 16 31695504 to 31695524 20 + TSS region transcription start site region 137912
Tssr137913 16 31695539 to 31695555 16 + TSS region transcription start site region 137913
Tssr137914 16 31695883 to 31695922 39 + TSS region transcription start site region 137914
Tssr137915 16 31713445 to 31713462 17 + TSS region transcription start site region 137915
Tssr137916 16 31716096 to 31716099 3 + TSS region transcription start site region 137916
Tssr4842 16 31740456 to 31740473 17 + TSS region transcription start site region 4842
Tssr4843 16 31744399 to 31744403 4 + TSS region transcription start site region 4843
Gm24879 16 31747200 to 31747342 142 - snoRNA gene predicted gene, 24879
Tssr137917 16 31749155 to 31749161 6 + TSS region transcription start site region 137917
Tssr137918 16 31754559 to 31754581 22 + TSS region transcription start site region 137918
Tssr137919 16 31754582 to 31754595 13 + TSS region transcription start site region 137919
Tssr137920 16 31754698 to 31754742 44 + TSS region transcription start site region 137920
Tssr137921 16 31754769 to 31754784 15 + TSS region transcription start site region 137921
Tssr137922 16 31754799 to 31754822 23 + TSS region transcription start site region 137922
Tssr137923 16 31754823 to 31754832 9 + TSS region transcription start site region 137923
Gm49705 16 31760966 to 31766184 5218 + unclassified gene predicted gene, 49705
Gm17899 16 31800480 to 31801339 859 - pseudogene predicted gene, 17899
Gm49713 16 31811842 to 31812611 769 - pseudogene predicted gene, 49713
Tssr137924 16 31852334 to 31852337 3 + TSS region transcription start site region 137924
Tssr137925 16 31865484 to 31865488 4 + TSS region transcription start site region 137925
Meltf 16 31878810 to 31899020 20210 + protein coding gene melanotransferrin
Tssr137926 16 31878847 to 31878858 11 + TSS region transcription start site region 137926
Tssr137927 16 31878868 to 31878883 15 + TSS region transcription start site region 137927
Cpgi8173 16 31883457 to 31883937 480 CpG island CpG island 8173
Cpgi8174 16 31884812 to 31885033 221 CpG island CpG island 8174
Tssr137928 16 31897596 to 31897619 23 + TSS region transcription start site region 137928
Tssr137929 16 31897847 to 31897892 45 + TSS region transcription start site region 137929
Gm34476 16 31908160 to 31912500 4340 - lncRNA gene predicted gene, 34476
Gm15703 16 31924989 to 31925868 879 + pseudogene predicted gene 15703
Tssr137930 16 31927024 to 31927043 19 + TSS region transcription start site region 137930
Cpgi8175 16 31932779 to 31934190 1411 CpG island CpG island 8175
Gm49731 16 31933647 to 31935380 1733 + unclassified gene predicted gene, 49731
Pigz 16 31933851 to 31946046 12195 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Z
Tssr137931 16 31933923 to 31933964 41 + TSS region transcription start site region 137931
Tssr137932 16 31933968 to 31934006 38 + TSS region transcription start site region 137932
Cpgi8176 16 31935348 to 31935841 493 CpG island CpG island 8176
Tssr140758 16 31935365 to 31935390 25 - TSS region transcription start site region 140758
Tssr137933 16 31940825 to 31940849 24 + TSS region transcription start site region 137933
Tssr137934 16 31942492 to 31942496 4 + TSS region transcription start site region 137934
Cpgi8177 16 31944091 to 31944306 215 CpG island CpG island 8177
0610012G03Rik 16 31947050 to 31948494 1444 - protein coding gene RIKEN cDNA 0610012G03 gene
Cpgi8178 16 31947792 to 31949036 1244 CpG island CpG island 8178
Tssr140759 16 31948413 to 31948430 17 - TSS region transcription start site region 140759
Tssr140760 16 31948432 to 31948542 110 - TSS region transcription start site region 140760
Ncbp2 16 31948546 to 31958472 9926 + protein coding gene nuclear cap binding protein subunit 2
Tssr137935 16 31948572 to 31948618 46 + TSS region transcription start site region 137935
Tssr137936 16 31948624 to 31948641 17 + TSS region transcription start site region 137936
Senp5 16 31959672 to 32003287 43615 - protein coding gene SUMO/sentrin specific peptidase 5
Cpgi8179 16 31970053 to 31970256 203 CpG island CpG island 8179
Gm15696 16 31970362 to 31970806 444 - pseudogene predicted gene 15696
Cpgi8180 16 31970624 to 31970858 234 CpG island CpG island 8180
Gm26269 16 31982109 to 31982234 125 + miRNA gene predicted gene, 26269
Rapop6 16 31984103 to 31984214 111 QTL radiation-induced apoptosis 6
D16Mit103 16 31984103 to 31984214 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 103
Gm49733 16 31986831 to 31987123 292 - sense intronic lncRNA gene predicted gene, 49733
Gm15694 16 31987178 to 31987460 282 - pseudogene predicted gene 15694
Hmgb1-ps6 16 31991253 to 31991866 613 - pseudogene high mobility group box 1, pseudogene 6
Tssr140761 16 31996675 to 31996697 22 - TSS region transcription start site region 140761
Cpgi8181 16 32002596 to 32003490 894 CpG island CpG island 8181
Tssr140762 16 32003049 to 32003058 9 - TSS region transcription start site region 140762
Tssr140763 16 32003122 to 32003183 61 - TSS region transcription start site region 140763
Tssr137937 16 32003220 to 32003266 46 + TSS region transcription start site region 137937
Tssr140764 16 32010110 to 32010138 28 - TSS region transcription start site region 140764