Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:28055072-30005171

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
B230343J05Rik 16 28157782 to 28160031 2249 unclassified non-coding RNA gene RIKEN cDNA B230343J05 gene
Tssr140645 16 28159869 to 28159874 5 - TSS region transcription start site region 140645
Fgf12 16 28160098 to 28753068 592970 - protein coding gene fibroblast growth factor 12
Tssr140646 16 28219830 to 28219837 7 - TSS region transcription start site region 140646
Tssr140647 16 28274308 to 28274313 5 - TSS region transcription start site region 140647
Tssr140648 16 28307171 to 28307175 4 - TSS region transcription start site region 140648
Tssr140649 16 28323548 to 28323571 23 - TSS region transcription start site region 140649
Tssr140650 16 28422459 to 28422462 3 - TSS region transcription start site region 140650
Cpgi8135 16 28444887 to 28445503 616 CpG island CpG island 8135
Tssr140651 16 28445364 to 28445395 31 - TSS region transcription start site region 140651
Tssr140652 16 28445683 to 28445694 11 - TSS region transcription start site region 140652
Cpgi8136 16 28445831 to 28447436 1605 CpG island CpG island 8136
Tssr140653 16 28445849 to 28445867 18 - TSS region transcription start site region 140653
Tssr140654 16 28446523 to 28446541 18 - TSS region transcription start site region 140654
Tssr140655 16 28446778 to 28446834 56 - TSS region transcription start site region 140655
Tssr140656 16 28446987 to 28447010 23 - TSS region transcription start site region 140656
Tssr140657 16 28447017 to 28447033 16 - TSS region transcription start site region 140657
Tssr140658 16 28500158 to 28500162 4 - TSS region transcription start site region 140658
Cpgi8137 16 28564154 to 28565377 1223 CpG island CpG island 8137
Tssr140659 16 28564864 to 28564886 22 - TSS region transcription start site region 140659
Gm41437 16 28565050 to 28568877 3827 + lncRNA gene predicted gene, 41437
Cpgi8138 16 28593194 to 28593436 242 CpG island CpG island 8138
Mir690 16 28599935 to 28600043 108 - miRNA gene microRNA 690
Gm46548 16 28609057 to 28634237 25180 - lncRNA gene predicted gene, 46548
4931407J08Rik 16 28630554 to 28632028 1474 unclassified gene RIKEN cDNA 4931407J08 gene
Tssr140660 16 28640789 to 28640824 35 - TSS region transcription start site region 140660
Tssr140661 16 28641057 to 28641066 9 - TSS region transcription start site region 140661
D330005D02Rik 16 28666676 to 28671045 4369 unclassified gene RIKEN cDNA D330005D02 gene
Tssr140662 16 28668797 to 28668806 9 - TSS region transcription start site region 140662
Tssr140663 16 28683594 to 28683596 2 - TSS region transcription start site region 140663
D16Mit89 16 28690314 to 28690463 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 89
Tssr140664 16 28707328 to 28707330 2 - TSS region transcription start site region 140664
Tssr140665 16 28714542 to 28714546 4 - TSS region transcription start site region 140665
Cpgi8139 16 28752619 to 28752814 195 CpG island CpG island 8139
Tssr140666 16 28753192 to 28753252 60 - TSS region transcription start site region 140666
Gm20018 16 28788199 to 28794253 6054 - pseudogene predicted gene, 20018
Mb21d2 16 28826176 to 28929673 103497 - protein coding gene Mab-21 domain containing 2
Cpgi8140 16 28827864 to 28828195 331 CpG island CpG island 8140
Tssr140667 16 28902593 to 28902615 22 - TSS region transcription start site region 140667
Tssr140668 16 28911815 to 28911820 5 - TSS region transcription start site region 140668
Cpgi8141 16 28928665 to 28930328 1663 CpG island CpG island 8141
Tssr137839 16 28929038 to 28929054 16 + TSS region transcription start site region 137839
Tssr140669 16 28929658 to 28929698 40 - TSS region transcription start site region 140669
Tssr140670 16 28929826 to 28929847 21 - TSS region transcription start site region 140670
Tssr140671 16 28929950 to 28929961 11 - TSS region transcription start site region 140671
Tssr140672 16 28929982 to 28930008 26 - TSS region transcription start site region 140672
Tssr140673 16 28930013 to 28930080 67 - TSS region transcription start site region 140673
Tssr140674 16 28930156 to 28930191 35 - TSS region transcription start site region 140674
Tssr140675 16 28930573 to 28930596 23 - TSS region transcription start site region 140675
Gm8253 16 28950923 to 28951355 432 - pseudogene predicted gene 8253
Tssr140676 16 28951396 to 28951418 22 - TSS region transcription start site region 140676
Lprm5 16 29030072 to 29030171 99 QTL lymphoproliferation modifier 5
D16Mit3 16 29030072 to 29030171 99 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 3
Tssr137840 16 29150169 to 29150181 12 + TSS region transcription start site region 137840
Plaat1 16 29209695 to 29230531 20836 + protein coding gene phospholipase A and acyltransferase 1
Tssr137841 16 29209707 to 29209726 19 + TSS region transcription start site region 137841
Cpgi8142 16 29209741 to 29210519 778 CpG island CpG island 8142
Tssr137842 16 29209780 to 29209791 11 + TSS region transcription start site region 137842
Tssr137843 16 29210109 to 29210153 44 + TSS region transcription start site region 137843
Tssr137844 16 29210156 to 29210202 46 + TSS region transcription start site region 137844
Atp13a5 16 29231851 to 29378732 146881 - protein coding gene ATPase type 13A5
Tssr140677 16 29233036 to 29233040 4 - TSS region transcription start site region 140677
Cpgi8143 16 29281414 to 29281623 209 CpG island CpG island 8143
Gm15752 16 29283966 to 29284359 393 - pseudogene predicted gene 15752
Tssr140678 16 29378570 to 29378610 40 - TSS region transcription start site region 140678
Tssr140679 16 29378612 to 29378625 13 - TSS region transcription start site region 140679
Tssr140680 16 29378696 to 29378712 16 - TSS region transcription start site region 140680
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
D16Mit57 16 29406542 to 29406653 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 57
Lrnx9 16 29406542 to 29406653 111 QTL learning-contextual 9
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Tssr140681 16 29441760 to 29441807 47 - TSS region transcription start site region 140681
Tssr140682 16 29490411 to 29490457 46 - TSS region transcription start site region 140682
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850
D630050H08Rik 16 29641378 to 29643447 2069 unclassified gene RIKEN cDNA D630050H08 gene
Tssr137851 16 29646436 to 29646440 4 + TSS region transcription start site region 137851
Gm49636 16 29750810 to 29754312 3502 - lincRNA gene predicted gene, 49636
Tssr140686 16 29788196 to 29788200 4 - TSS region transcription start site region 140686
9530020O07Rik 16 29809388 to 29814107 4719 protein coding gene RIKEN cDNA 9530020O07 gene
Gm26834 16 29811058 to 29837814 26756 + lincRNA gene predicted gene, 26834
Gm46567 16 29813447 to 29814642 1195 + protein coding gene predicted gene, 46567
Cpgi8145 16 29813539 to 29814468 929 CpG island CpG island 8145
Gm32679 16 29829456 to 29834728 5272 - lincRNA gene predicted gene, 32679
Tssr140687 16 29834722 to 29834736 14 - TSS region transcription start site region 140687
Cpgi8146 16 29839320 to 29839657 337 CpG island CpG island 8146
Tssr137852 16 29839349 to 29839385 36 + TSS region transcription start site region 137852
Tssr137853 16 29843615 to 29843621 6 + TSS region transcription start site region 137853
Tssr137854 16 29843874 to 29843923 49 + TSS region transcription start site region 137854
Tssr140688 16 29845723 to 29845769 46 - TSS region transcription start site region 140688
Tssr137855 16 29845957 to 29845966 9 + TSS region transcription start site region 137855
Tssr140689 16 29849607 to 29849621 14 - TSS region transcription start site region 140689
Tssr140690 16 29849629 to 29849645 16 - TSS region transcription start site region 140690
Gm32740 16 29860564 to 29867537 6973 + lncRNA gene predicted gene, 32740
Gm26569 16 29907519 to 29946754 39235 - lincRNA gene predicted gene, 26569
Cpgi8147 16 29945893 to 29946367 474 CpG island CpG island 8147
Tssr140691 16 29946499 to 29946532 33 - TSS region transcription start site region 140691
Gm1968 16 29957927 to 29979124 21197 - lincRNA gene predicted gene 1968
Gm32796 16 29972735 to 29981987 9252 + lncRNA gene predicted gene, 32796
Tssr140692 16 29998241 to 29998269 28 - TSS region transcription start site region 140692