Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:28050072-30010171

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
B230343J05Rik 16 28157782 to 28160031 2249 unclassified non-coding RNA gene RIKEN cDNA B230343J05 gene
Tssr140645 16 28159869 to 28159874 5 - TSS region transcription start site region 140645
Fgf12 16 28160098 to 28753068 592970 - protein coding gene fibroblast growth factor 12
Tssr140646 16 28219830 to 28219837 7 - TSS region transcription start site region 140646
Tssr140647 16 28274308 to 28274313 5 - TSS region transcription start site region 140647
Tssr140648 16 28307171 to 28307175 4 - TSS region transcription start site region 140648
Tssr140649 16 28323548 to 28323571 23 - TSS region transcription start site region 140649
Tssr140650 16 28422459 to 28422462 3 - TSS region transcription start site region 140650
Cpgi8135 16 28444887 to 28445503 616 CpG island CpG island 8135
Tssr140651 16 28445364 to 28445395 31 - TSS region transcription start site region 140651
Tssr140652 16 28445683 to 28445694 11 - TSS region transcription start site region 140652
Cpgi8136 16 28445831 to 28447436 1605 CpG island CpG island 8136
Tssr140653 16 28445849 to 28445867 18 - TSS region transcription start site region 140653
Tssr140654 16 28446523 to 28446541 18 - TSS region transcription start site region 140654
Tssr140655 16 28446778 to 28446834 56 - TSS region transcription start site region 140655
Tssr140656 16 28446987 to 28447010 23 - TSS region transcription start site region 140656
Tssr140657 16 28447017 to 28447033 16 - TSS region transcription start site region 140657
Tssr140658 16 28500158 to 28500162 4 - TSS region transcription start site region 140658
Cpgi8137 16 28564154 to 28565377 1223 CpG island CpG island 8137
Tssr140659 16 28564864 to 28564886 22 - TSS region transcription start site region 140659
Gm41437 16 28565050 to 28568877 3827 + lncRNA gene predicted gene, 41437
Cpgi8138 16 28593194 to 28593436 242 CpG island CpG island 8138
Mir690 16 28599935 to 28600043 108 - miRNA gene microRNA 690
Gm46548 16 28609057 to 28634237 25180 - lncRNA gene predicted gene, 46548
4931407J08Rik 16 28630554 to 28632028 1474 unclassified gene RIKEN cDNA 4931407J08 gene
Tssr140660 16 28640789 to 28640824 35 - TSS region transcription start site region 140660
Tssr140661 16 28641057 to 28641066 9 - TSS region transcription start site region 140661
D330005D02Rik 16 28666676 to 28671045 4369 unclassified gene RIKEN cDNA D330005D02 gene
Tssr140662 16 28668797 to 28668806 9 - TSS region transcription start site region 140662
Tssr140663 16 28683594 to 28683596 2 - TSS region transcription start site region 140663
D16Mit89 16 28690314 to 28690463 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 89
Tssr140664 16 28707328 to 28707330 2 - TSS region transcription start site region 140664
Tssr140665 16 28714542 to 28714546 4 - TSS region transcription start site region 140665
Cpgi8139 16 28752619 to 28752814 195 CpG island CpG island 8139
Tssr140666 16 28753192 to 28753252 60 - TSS region transcription start site region 140666
Gm20018 16 28788199 to 28794253 6054 - pseudogene predicted gene, 20018
Mb21d2 16 28826176 to 28929673 103497 - protein coding gene Mab-21 domain containing 2
Cpgi8140 16 28827864 to 28828195 331 CpG island CpG island 8140
Tssr140667 16 28902593 to 28902615 22 - TSS region transcription start site region 140667
Tssr140668 16 28911815 to 28911820 5 - TSS region transcription start site region 140668
Cpgi8141 16 28928665 to 28930328 1663 CpG island CpG island 8141
Tssr137839 16 28929038 to 28929054 16 + TSS region transcription start site region 137839
Tssr140669 16 28929658 to 28929698 40 - TSS region transcription start site region 140669
Tssr140670 16 28929826 to 28929847 21 - TSS region transcription start site region 140670
Tssr140671 16 28929950 to 28929961 11 - TSS region transcription start site region 140671
Tssr140672 16 28929982 to 28930008 26 - TSS region transcription start site region 140672
Tssr140673 16 28930013 to 28930080 67 - TSS region transcription start site region 140673
Tssr140674 16 28930156 to 28930191 35 - TSS region transcription start site region 140674
Tssr140675 16 28930573 to 28930596 23 - TSS region transcription start site region 140675
Gm8253 16 28950923 to 28951355 432 - pseudogene predicted gene 8253
Tssr140676 16 28951396 to 28951418 22 - TSS region transcription start site region 140676
Lprm5 16 29030072 to 29030171 99 QTL lymphoproliferation modifier 5
D16Mit3 16 29030072 to 29030171 99 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 3
Tssr137840 16 29150169 to 29150181 12 + TSS region transcription start site region 137840
Plaat1 16 29209695 to 29230531 20836 + protein coding gene phospholipase A and acyltransferase 1
Tssr137841 16 29209707 to 29209726 19 + TSS region transcription start site region 137841
Cpgi8142 16 29209741 to 29210519 778 CpG island CpG island 8142
Tssr137842 16 29209780 to 29209791 11 + TSS region transcription start site region 137842
Tssr137843 16 29210109 to 29210153 44 + TSS region transcription start site region 137843
Tssr137844 16 29210156 to 29210202 46 + TSS region transcription start site region 137844
Atp13a5 16 29231851 to 29378732 146881 - protein coding gene ATPase type 13A5
Tssr140677 16 29233036 to 29233040 4 - TSS region transcription start site region 140677
Cpgi8143 16 29281414 to 29281623 209 CpG island CpG island 8143
Gm15752 16 29283966 to 29284359 393 - pseudogene predicted gene 15752
Tssr140678 16 29378570 to 29378610 40 - TSS region transcription start site region 140678
Tssr140679 16 29378612 to 29378625 13 - TSS region transcription start site region 140679
Tssr140680 16 29378696 to 29378712 16 - TSS region transcription start site region 140680
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
Lrnx9 16 29406542 to 29406653 111 QTL learning-contextual 9
D16Mit57 16 29406542 to 29406653 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 57
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Tssr140681 16 29441760 to 29441807 47 - TSS region transcription start site region 140681
Tssr140682 16 29490411 to 29490457 46 - TSS region transcription start site region 140682
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850
D630050H08Rik 16 29641378 to 29643447 2069 unclassified gene RIKEN cDNA D630050H08 gene
Tssr137851 16 29646436 to 29646440 4 + TSS region transcription start site region 137851
Gm49636 16 29750810 to 29754312 3502 - lincRNA gene predicted gene, 49636
Tssr140686 16 29788196 to 29788200 4 - TSS region transcription start site region 140686
9530020O07Rik 16 29809388 to 29814107 4719 protein coding gene RIKEN cDNA 9530020O07 gene
Gm26834 16 29811058 to 29837814 26756 + lincRNA gene predicted gene, 26834
Gm46567 16 29813447 to 29814642 1195 + protein coding gene predicted gene, 46567
Cpgi8145 16 29813539 to 29814468 929 CpG island CpG island 8145
Gm32679 16 29829456 to 29834728 5272 - lincRNA gene predicted gene, 32679
Tssr140687 16 29834722 to 29834736 14 - TSS region transcription start site region 140687
Cpgi8146 16 29839320 to 29839657 337 CpG island CpG island 8146
Tssr137852 16 29839349 to 29839385 36 + TSS region transcription start site region 137852
Tssr137853 16 29843615 to 29843621 6 + TSS region transcription start site region 137853
Tssr137854 16 29843874 to 29843923 49 + TSS region transcription start site region 137854
Tssr140688 16 29845723 to 29845769 46 - TSS region transcription start site region 140688
Tssr137855 16 29845957 to 29845966 9 + TSS region transcription start site region 137855
Tssr140689 16 29849607 to 29849621 14 - TSS region transcription start site region 140689
Tssr140690 16 29849629 to 29849645 16 - TSS region transcription start site region 140690
Gm32740 16 29860564 to 29867537 6973 + lncRNA gene predicted gene, 32740
Gm26569 16 29907519 to 29946754 39235 - lincRNA gene predicted gene, 26569
Cpgi8147 16 29945893 to 29946367 474 CpG island CpG island 8147
Tssr140691 16 29946499 to 29946532 33 - TSS region transcription start site region 140691
Gm1968 16 29957927 to 29979124 21197 - lincRNA gene predicted gene 1968
Gm32796 16 29972735 to 29981987 9252 + lncRNA gene predicted gene, 32796
Tssr140692 16 29998241 to 29998269 28 - TSS region transcription start site region 140692
Cpgi8148 16 30008303 to 30009365 1062 CpG island CpG island 8148
Tssr137856 16 30008657 to 30008672 15 + TSS region transcription start site region 137856
4632428C04Rik 16 30008667 to 30021430 12763 + lincRNA gene RIKEN cDNA 4632428C04 gene
Tssr137857 16 30008696 to 30008703 7 + TSS region transcription start site region 137857
Tssr137858 16 30010017 to 30010020 3 + TSS region transcription start site region 137858