Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:27297017-29597033

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr4834 16 27302882 to 27302883 1 + TSS region transcription start site region 4834
Tssr137819 16 27307632 to 27307650 18 + TSS region transcription start site region 137819
Ostn 16 27307641 to 27351209 43568 + protein coding gene osteocrin
Gm32312 16 27317944 to 27326641 8697 - antisense lncRNA gene predicted gene, 32312
Gm15970 16 27343114 to 27343943 829 - pseudogene predicted gene 15970
Tssr140642 16 27348439 to 27348470 31 - TSS region transcription start site region 140642
Uts2b 16 27353322 to 27370239 16917 - protein coding gene urotensin 2B
Tssr140643 16 27370214 to 27370217 3 - TSS region transcription start site region 140643
Cpgi8134 16 27388727 to 27389427 700 CpG island CpG island 8134
Tssr137820 16 27388755 to 27388758 3 + TSS region transcription start site region 137820
Tssr137821 16 27388848 to 27388859 11 + TSS region transcription start site region 137821
Ccdc50 16 27388869 to 27452218 63349 + protein coding gene coiled-coil domain containing 50
Tssr137822 16 27388949 to 27388966 17 + TSS region transcription start site region 137822
Tssr137823 16 27388972 to 27388998 26 + TSS region transcription start site region 137823
Tssr137824 16 27389004 to 27389031 27 + TSS region transcription start site region 137824
Tssr137825 16 27389034 to 27389089 55 + TSS region transcription start site region 137825
Tssr137826 16 27389097 to 27389111 14 + TSS region transcription start site region 137826
Tssr137827 16 27389911 to 27389943 32 + TSS region transcription start site region 137827
Tssr137828 16 27411073 to 27411084 11 + TSS region transcription start site region 137828
Tssr137829 16 27417172 to 27417193 21 + TSS region transcription start site region 137829
Tssr137830 16 27417218 to 27417233 15 + TSS region transcription start site region 137830
Tssr137831 16 27422769 to 27422785 16 + TSS region transcription start site region 137831
Tssr137832 16 27422925 to 27422967 42 + TSS region transcription start site region 137832
Tssr137833 16 27423059 to 27423099 40 + TSS region transcription start site region 137833
Tssr137834 16 27435058 to 27435066 8 + TSS region transcription start site region 137834
Tssr137835 16 27439630 to 27439644 14 + TSS region transcription start site region 137835
Tssr137836 16 27439816 to 27439835 19 + TSS region transcription start site region 137836
Tssr140644 16 27444570 to 27444616 46 - TSS region transcription start site region 140644
Tssr137837 16 27450387 to 27450393 6 + TSS region transcription start site region 137837
Gm32356 16 27467384 to 27474396 7012 + lncRNA gene predicted gene, 32356
Gm18234 16 27843362 to 27844412 1050 - pseudogene predicted gene, 18234
Tssr4835 16 27849828 to 27849849 21 + TSS region transcription start site region 4835
Tssr137838 16 27849873 to 27849903 30 + TSS region transcription start site region 137838
Gm10823 16 27849930 to 27926128 76198 + lincRNA gene predicted gene 10823
Gm49765 16 27970029 to 27970345 316 - pseudogene predicted gene, 49765
B230343J05Rik 16 28157782 to 28160031 2249 unclassified non-coding RNA gene RIKEN cDNA B230343J05 gene
Tssr140645 16 28159869 to 28159874 5 - TSS region transcription start site region 140645
Fgf12 16 28160098 to 28753068 592970 - protein coding gene fibroblast growth factor 12
Tssr140646 16 28219830 to 28219837 7 - TSS region transcription start site region 140646
Tssr140647 16 28274308 to 28274313 5 - TSS region transcription start site region 140647
Tssr140648 16 28307171 to 28307175 4 - TSS region transcription start site region 140648
Tssr140649 16 28323548 to 28323571 23 - TSS region transcription start site region 140649
Tssr140650 16 28422459 to 28422462 3 - TSS region transcription start site region 140650
Cpgi8135 16 28444887 to 28445503 616 CpG island CpG island 8135
Tssr140651 16 28445364 to 28445395 31 - TSS region transcription start site region 140651
Tssr140652 16 28445683 to 28445694 11 - TSS region transcription start site region 140652
Cpgi8136 16 28445831 to 28447436 1605 CpG island CpG island 8136
Tssr140653 16 28445849 to 28445867 18 - TSS region transcription start site region 140653
Tssr140654 16 28446523 to 28446541 18 - TSS region transcription start site region 140654
Tssr140655 16 28446778 to 28446834 56 - TSS region transcription start site region 140655
Tssr140656 16 28446987 to 28447010 23 - TSS region transcription start site region 140656
Tssr140657 16 28447017 to 28447033 16 - TSS region transcription start site region 140657
Tssr140658 16 28500158 to 28500162 4 - TSS region transcription start site region 140658
Cpgi8137 16 28564154 to 28565377 1223 CpG island CpG island 8137
Tssr140659 16 28564864 to 28564886 22 - TSS region transcription start site region 140659
Gm41437 16 28565050 to 28568877 3827 + lncRNA gene predicted gene, 41437
Cpgi8138 16 28593194 to 28593436 242 CpG island CpG island 8138
Mir690 16 28599935 to 28600043 108 - miRNA gene microRNA 690
Gm46548 16 28609057 to 28634237 25180 - lncRNA gene predicted gene, 46548
4931407J08Rik 16 28630554 to 28632028 1474 unclassified gene RIKEN cDNA 4931407J08 gene
Tssr140660 16 28640789 to 28640824 35 - TSS region transcription start site region 140660
Tssr140661 16 28641057 to 28641066 9 - TSS region transcription start site region 140661
D330005D02Rik 16 28666676 to 28671045 4369 unclassified gene RIKEN cDNA D330005D02 gene
Tssr140662 16 28668797 to 28668806 9 - TSS region transcription start site region 140662
Tssr140663 16 28683594 to 28683596 2 - TSS region transcription start site region 140663
D16Mit89 16 28690314 to 28690463 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 89
Tssr140664 16 28707328 to 28707330 2 - TSS region transcription start site region 140664
Tssr140665 16 28714542 to 28714546 4 - TSS region transcription start site region 140665
Cpgi8139 16 28752619 to 28752814 195 CpG island CpG island 8139
Tssr140666 16 28753192 to 28753252 60 - TSS region transcription start site region 140666
Gm20018 16 28788199 to 28794253 6054 - pseudogene predicted gene, 20018
Mb21d2 16 28826176 to 28929673 103497 - protein coding gene Mab-21 domain containing 2
Cpgi8140 16 28827864 to 28828195 331 CpG island CpG island 8140
Tssr140667 16 28902593 to 28902615 22 - TSS region transcription start site region 140667
Tssr140668 16 28911815 to 28911820 5 - TSS region transcription start site region 140668
Cpgi8141 16 28928665 to 28930328 1663 CpG island CpG island 8141
Tssr137839 16 28929038 to 28929054 16 + TSS region transcription start site region 137839
Tssr140669 16 28929658 to 28929698 40 - TSS region transcription start site region 140669
Tssr140670 16 28929826 to 28929847 21 - TSS region transcription start site region 140670
Tssr140671 16 28929950 to 28929961 11 - TSS region transcription start site region 140671
Tssr140672 16 28929982 to 28930008 26 - TSS region transcription start site region 140672
Tssr140673 16 28930013 to 28930080 67 - TSS region transcription start site region 140673
Tssr140674 16 28930156 to 28930191 35 - TSS region transcription start site region 140674
Tssr140675 16 28930573 to 28930596 23 - TSS region transcription start site region 140675
Gm8253 16 28950923 to 28951355 432 - pseudogene predicted gene 8253
Tssr140676 16 28951396 to 28951418 22 - TSS region transcription start site region 140676
Lprm5 16 29030072 to 29030171 99 QTL lymphoproliferation modifier 5
D16Mit3 16 29030072 to 29030171 99 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 3
Tssr137840 16 29150169 to 29150181 12 + TSS region transcription start site region 137840
Plaat1 16 29209695 to 29230531 20836 + protein coding gene phospholipase A and acyltransferase 1
Tssr137841 16 29209707 to 29209726 19 + TSS region transcription start site region 137841
Cpgi8142 16 29209741 to 29210519 778 CpG island CpG island 8142
Tssr137842 16 29209780 to 29209791 11 + TSS region transcription start site region 137842
Tssr137843 16 29210109 to 29210153 44 + TSS region transcription start site region 137843
Tssr137844 16 29210156 to 29210202 46 + TSS region transcription start site region 137844
Atp13a5 16 29231851 to 29378732 146881 - protein coding gene ATPase type 13A5
Tssr140677 16 29233036 to 29233040 4 - TSS region transcription start site region 140677
Cpgi8143 16 29281414 to 29281623 209 CpG island CpG island 8143
Gm15752 16 29283966 to 29284359 393 - pseudogene predicted gene 15752
Tssr140678 16 29378570 to 29378610 40 - TSS region transcription start site region 140678
Tssr140679 16 29378612 to 29378625 13 - TSS region transcription start site region 140679
Tssr140680 16 29378696 to 29378712 16 - TSS region transcription start site region 140680
Atp13a4 16 29395853 to 29544864 149011 - protein coding gene ATPase type 13A4
Lrnx9 16 29406542 to 29406653 111 QTL learning-contextual 9
D16Mit57 16 29406542 to 29406653 111 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 57
Nilac10 16 29406653 to 7319042 -22087611 QTL nicotine induced locomotor activity 10
Tssr140681 16 29441760 to 29441807 47 - TSS region transcription start site region 140681
Tssr140682 16 29490411 to 29490457 46 - TSS region transcription start site region 140682
Gm18236 16 29502989 to 29504232 1243 + pseudogene predicted gene, 18236
Tssr137845 16 29533232 to 29533234 2 + TSS region transcription start site region 137845
Tssr140683 16 29541384 to 29541409 25 - TSS region transcription start site region 140683
Tssr140684 16 29541541 to 29541558 17 - TSS region transcription start site region 140684
Tssr140685 16 29544852 to 29544869 17 - TSS region transcription start site region 140685
Cpgi8144 16 29579194 to 29579733 539 CpG island CpG island 8144
Tssr137846 16 29579299 to 29579310 11 + TSS region transcription start site region 137846
Tssr137847 16 29579331 to 29579342 11 + TSS region transcription start site region 137847
Opa1 16 29579334 to 29654884 75550 + protein coding gene OPA1, mitochondrial dynamin like GTPase
Tssr137848 16 29579347 to 29579417 70 + TSS region transcription start site region 137848
Tssr137849 16 29579426 to 29579439 13 + TSS region transcription start site region 137849
Tssr137850 16 29579441 to 29579459 18 + TSS region transcription start site region 137850