Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:23112201-23202220

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif4a2 16 23107444 to 23114136 6692 + protein coding gene eukaryotic translation initiation factor 4A2
Tssr137657 16 23112242 to 23112294 52 + TSS region transcription start site region 137657
Rfc4 16 23113948 to 23127730 13782 - protein coding gene replication factor C (activator 1) 4
Cpgi8116 16 23127510 to 23128480 970 CpG island CpG island 8116
Tssr140543 16 23127702 to 23127746 44 - TSS region transcription start site region 140543
Tssr137658 16 23127783 to 23127824 41 + TSS region transcription start site region 137658
6330408M09Rik 16 23127793 to 23128922 1129 + bidirectional promoter lncRNA gene RIKEN cDNA 6330408M09 gene
Gm49624 16 23133906 to 23134320 414 - pseudogene predicted gene, 49624
Adipoq 16 23146536 to 23157968 11432 + protein coding gene adiponectin, C1Q and collagen domain containing
Tssr4823 16 23146567 to 23146578 11 + TSS region transcription start site region 4823
Tssr137659 16 23146580 to 23146621 41 + TSS region transcription start site region 137659
Tssr140544 16 23157201 to 23157220 19 - TSS region transcription start site region 140544
Tssr137660 16 23157208 to 23157230 22 + TSS region transcription start site region 137660
Tssr140545 16 23157230 to 23157232 2 - TSS region transcription start site region 140545
Tssr140546 16 23157253 to 23157262 9 - TSS region transcription start site region 140546
Tssr137661 16 23157333 to 23157349 16 + TSS region transcription start site region 137661
Cpgi8117 16 23165235 to 23165438 203 CpG island CpG island 8117
Tssr140547 16 23171014 to 23171028 14 - TSS region transcription start site region 140547
C730014E05Rik 16 23174788 to 23218929 44141 + lncRNA gene RIKEN cDNA C730014E05 gene
Tssr137662 16 23175177 to 23175193 16 + TSS region transcription start site region 137662
Tssr137663 16 23175223 to 23175237 14 + TSS region transcription start site region 137663
Tssr137664 16 23175253 to 23175313 60 + TSS region transcription start site region 137664
B630019A10Rik 16 23175280 to 23224446 49166 + antisense lncRNA gene RIKEN cDNA B630019A10 gene
Tssr137665 16 23175350 to 23175377 27 + TSS region transcription start site region 137665
Tssr137666 16 23175425 to 23175434 9 + TSS region transcription start site region 137666
Tssr137667 16 23179137 to 23179142 5 + TSS region transcription start site region 137667
Gm6630 16 23179556 to 23180009 453 + pseudogene predicted pseudogene 6630
Tssr140548 16 23181594 to 23181604 10 - TSS region transcription start site region 140548
Tssr137668 16 23192068 to 23192075 7 + TSS region transcription start site region 137668
Tssr137669 16 23192094 to 23192141 47 + TSS region transcription start site region 137669
Tssr137670 16 23192144 to 23192171 27 + TSS region transcription start site region 137670
Tssr4824 16 23192203 to 23192216 13 + TSS region transcription start site region 4824
Gm15746 16 23197095 to 23198121 1026 - pseudogene predicted gene 15746