Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:20556354-20686421

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Abcf3 16 20548577 to 20561379 12802 + protein coding gene ATP-binding cassette, sub-family F (GCN20), member 3
Gm49744 16 20565577 to 20566028 451 - pseudogene predicted gene, 49744
Gm49745 16 20566358 to 20568508 2150 + lincRNA gene predicted gene, 49745
Gm49746 16 20571410 to 20571682 272 + pseudogene predicted gene, 49746
Gm20164 16 20583109 to 20583424 315 + pseudogene predicted gene, 20164
Gm35685 16 20587930 to 20589971 2041 - lncRNA gene predicted gene, 35685
Vwa5b2 16 20589471 to 20605377 15906 + protein coding gene von Willebrand factor A domain containing 5B2
Cpgi8076 16 20589507 to 20591955 2448 CpG island CpG island 8076
Tssr140389 16 20589984 to 20590042 58 - TSS region transcription start site region 140389
Tssr4811 16 20590088 to 20590115 27 + TSS region transcription start site region 4811
Gm49748 16 20590117 to 20590684 567 - antisense lncRNA gene predicted gene, 49748
Tssr137453 16 20590146 to 20590174 28 + TSS region transcription start site region 137453
Mir1224 16 20604452 to 20604536 84 + miRNA gene microRNA 1224
Alg3 16 20605374 to 20611735 6361 - protein coding gene asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
Tssr137454 16 20609989 to 20610009 20 + TSS region transcription start site region 137454
Cpgi8077 16 20610504 to 20610845 341 CpG island CpG island 8077
Tssr140390 16 20610741 to 20610757 16 - TSS region transcription start site region 140390
Cpgi8078 16 20611337 to 20612089 752 CpG island CpG island 8078
Tssr137455 16 20611585 to 20611635 50 + TSS region transcription start site region 137455
Eef1akmt4 16 20611593 to 20619011 7418 + protein coding gene EEF1A lysine methyltransferase 4
Gm49333 16 20611610 to 20645920 34310 + protein coding gene predicted gene, 49333
Tssr137456 16 20611675 to 20611686 11 + TSS region transcription start site region 137456
Camk2n2 16 20619215 to 20621278 2063 - protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 2
Cpgi8079 16 20619509 to 20622693 3184 CpG island CpG island 8079
Tssr140391 16 20619826 to 20619871 45 - TSS region transcription start site region 140391
Tssr140392 16 20621209 to 20621229 20 - TSS region transcription start site region 140392
Tssr140393 16 20621231 to 20621252 21 - TSS region transcription start site region 140393
Tssr140394 16 20621255 to 20621304 49 - TSS region transcription start site region 140394
Tssr140395 16 20621354 to 20621421 67 - TSS region transcription start site region 140395
Tssr140396 16 20621430 to 20621447 17 - TSS region transcription start site region 140396
Tssr140397 16 20621448 to 20621481 33 - TSS region transcription start site region 140397
Tssr140398 16 20622324 to 20622335 11 - TSS region transcription start site region 140398
Cpgi8080 16 20629669 to 20630376 707 CpG island CpG island 8080
Tssr137457 16 20629799 to 20629837 38 + TSS region transcription start site region 137457
Ece2 16 20629828 to 20646485 16657 + protein coding gene endothelin converting enzyme 2
Tssr137458 16 20629842 to 20629894 52 + TSS region transcription start site region 137458
Tssr137459 16 20629972 to 20629983 11 + TSS region transcription start site region 137459
Tssr137460 16 20629984 to 20630006 22 + TSS region transcription start site region 137460
Cpgi8081 16 20651343 to 20652090 747 CpG island CpG island 8081
Psmd2 16 20651652 to 20663414 11762 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
Tssr137461 16 20651664 to 20651712 48 + TSS region transcription start site region 137461
Tssr137462 16 20654436 to 20654440 4 + TSS region transcription start site region 137462
Tssr137463 16 20657909 to 20657927 18 + TSS region transcription start site region 137463
Gm4462 16 20663754 to 20665056 1302 + pseudogene predicted gene 4462
Cpgi8082 16 20672506 to 20673761 1255 CpG island CpG island 8082
Tssr137464 16 20672716 to 20672859 143 + TSS region transcription start site region 137464
Eif4g1 16 20672720 to 20692883 20163 + protein coding gene eukaryotic translation initiation factor 4, gamma 1
Tssr137465 16 20672887 to 20672892 5 + TSS region transcription start site region 137465
Tssr137466 16 20672907 to 20672918 11 + TSS region transcription start site region 137466
Tssr137467 16 20672921 to 20672942 21 + TSS region transcription start site region 137467
Tssr137468 16 20673096 to 20673117 21 + TSS region transcription start site region 137468
Tssr137469 16 20673195 to 20673245 50 + TSS region transcription start site region 137469
Tssr137470 16 20673264 to 20673362 98 + TSS region transcription start site region 137470
Tssr137471 16 20673534 to 20673607 73 + TSS region transcription start site region 137471
Tssr137472 16 20673865 to 20673887 22 + TSS region transcription start site region 137472
Tssr137473 16 20674254 to 20674274 20 + TSS region transcription start site region 137473
Tssr137474 16 20675357 to 20675376 19 + TSS region transcription start site region 137474
Tssr137475 16 20675389 to 20675430 41 + TSS region transcription start site region 137475
Tssr137476 16 20675726 to 20675739 13 + TSS region transcription start site region 137476
Tssr137477 16 20677614 to 20677634 20 + TSS region transcription start site region 137477
Tssr137478 16 20677653 to 20677672 19 + TSS region transcription start site region 137478
Tssr137479 16 20678210 to 20678256 46 + TSS region transcription start site region 137479
Tssr137480 16 20678405 to 20678434 29 + TSS region transcription start site region 137480
Tssr137481 16 20678436 to 20678451 15 + TSS region transcription start site region 137481
Tssr137482 16 20678637 to 20678648 11 + TSS region transcription start site region 137482
Tssr137483 16 20679636 to 20679678 42 + TSS region transcription start site region 137483
Tssr137484 16 20681763 to 20681784 21 + TSS region transcription start site region 137484
Tssr137485 16 20684240 to 20684242 2 + TSS region transcription start site region 137485
Snord66 16 20684256 to 20684313 57 + snoRNA gene small nucleolar RNA, C/D box 66