Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:20447501-20627511

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D16Ertd778e 16 20451620 to 20451819 199 DNA segment DNA segment, Chr 16, ERATO Doi 778, expressed
Tssr140387 16 20454366 to 20454375 9 - TSS region transcription start site region 140387
Gm41432 16 20457538 to 20459284 1746 + lncRNA gene predicted gene, 41432
Gm20615 16 20488788 to 20491147 2359 + pseudogene predicted gene 20615
Cpgi8071 16 20498469 to 20499385 916 CpG island CpG island 8071
Tssr137432 16 20498793 to 20498804 11 + TSS region transcription start site region 137432
Eif2b5 16 20498817 to 20509323 10506 + protein coding gene eukaryotic translation initiation factor 2B, subunit 5 epsilon
Tssr137433 16 20498847 to 20498866 19 + TSS region transcription start site region 137433
Tssr137434 16 20498877 to 20498919 42 + TSS region transcription start site region 137434
Gm16618 16 20511133 to 20517766 6633 - antisense lncRNA gene predicted gene, 16618
Cpgi8072 16 20516425 to 20517572 1147 CpG island CpG island 8072
Tssr137435 16 20516885 to 20516896 11 + TSS region transcription start site region 137435
Tssr137436 16 20516962 to 20516999 37 + TSS region transcription start site region 137436
Dvl3 16 20516982 to 20534010 17028 + protein coding gene dishevelled segment polarity protein 3
Tssr137437 16 20517000 to 20517072 72 + TSS region transcription start site region 137437
Tssr137438 16 20517076 to 20517130 54 + TSS region transcription start site region 137438
Cpgi8073 16 20531154 to 20531313 159 CpG island CpG island 8073
Tssr137439 16 20531594 to 20531606 12 + TSS region transcription start site region 137439
Tssr137440 16 20531855 to 20531870 15 + TSS region transcription start site region 137440
Tssr137441 16 20532479 to 20532509 30 + TSS region transcription start site region 137441
Cpgi8074 16 20535242 to 20535998 756 CpG island CpG island 8074
Tssr137442 16 20535435 to 20535439 4 + TSS region transcription start site region 137442
Tssr137443 16 20535460 to 20535471 11 + TSS region transcription start site region 137443
Tssr137444 16 20535475 to 20535546 71 + TSS region transcription start site region 137444
Ap2m1 16 20535480 to 20544909 9429 + protein coding gene adaptor-related protein complex 2, mu 1 subunit
Tssr137445 16 20537501 to 20537511 10 + TSS region transcription start site region 137445
Tssr137446 16 20537593 to 20537618 25 + TSS region transcription start site region 137446
Tssr137447 16 20538220 to 20538250 30 + TSS region transcription start site region 137447
Tssr137448 16 20539974 to 20540022 48 + TSS region transcription start site region 137448
Tssr137449 16 20540586 to 20540597 11 + TSS region transcription start site region 137449
Tssr137450 16 20540627 to 20540640 13 + TSS region transcription start site region 137450
Tssr137451 16 20540663 to 20540766 103 + TSS region transcription start site region 137451
Gm15760 16 20545212 to 20548456 3244 - pseudogene predicted gene 15760
Cpgi8075 16 20548118 to 20549107 989 CpG island CpG island 8075
Tssr140388 16 20548432 to 20548460 28 - TSS region transcription start site region 140388
Abcf3 16 20548577 to 20561379 12802 + protein coding gene ATP-binding cassette, sub-family F (GCN20), member 3
Tssr137452 16 20548637 to 20548672 35 + TSS region transcription start site region 137452
Gm49744 16 20565577 to 20566028 451 - pseudogene predicted gene, 49744
Gm49745 16 20566358 to 20568508 2150 + lincRNA gene predicted gene, 49745
Gm49746 16 20571410 to 20571682 272 + pseudogene predicted gene, 49746
Gm20164 16 20583109 to 20583424 315 + pseudogene predicted gene, 20164
Gm35685 16 20587930 to 20589971 2041 - lncRNA gene predicted gene, 35685
Vwa5b2 16 20589471 to 20605377 15906 + protein coding gene von Willebrand factor A domain containing 5B2
Cpgi8076 16 20589507 to 20591955 2448 CpG island CpG island 8076
Tssr140389 16 20589984 to 20590042 58 - TSS region transcription start site region 140389
Tssr4811 16 20590088 to 20590115 27 + TSS region transcription start site region 4811
Gm49748 16 20590117 to 20590684 567 - antisense lncRNA gene predicted gene, 49748
Tssr137453 16 20590146 to 20590174 28 + TSS region transcription start site region 137453
Mir1224 16 20604452 to 20604536 84 + miRNA gene microRNA 1224
Alg3 16 20605374 to 20611735 6361 - protein coding gene asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)
Tssr137454 16 20609989 to 20610009 20 + TSS region transcription start site region 137454
Cpgi8077 16 20610504 to 20610845 341 CpG island CpG island 8077
Tssr140390 16 20610741 to 20610757 16 - TSS region transcription start site region 140390
Cpgi8078 16 20611337 to 20612089 752 CpG island CpG island 8078
Tssr137455 16 20611585 to 20611635 50 + TSS region transcription start site region 137455
Eef1akmt4 16 20611593 to 20619011 7418 + protein coding gene EEF1A lysine methyltransferase 4
Gm49333 16 20611610 to 20645920 34310 + protein coding gene predicted gene, 49333
Tssr137456 16 20611675 to 20611686 11 + TSS region transcription start site region 137456
Camk2n2 16 20619215 to 20621278 2063 - protein coding gene calcium/calmodulin-dependent protein kinase II inhibitor 2
Cpgi8079 16 20619509 to 20622693 3184 CpG island CpG island 8079
Tssr140391 16 20619826 to 20619871 45 - TSS region transcription start site region 140391
Tssr140392 16 20621209 to 20621229 20 - TSS region transcription start site region 140392
Tssr140393 16 20621231 to 20621252 21 - TSS region transcription start site region 140393
Tssr140394 16 20621255 to 20621304 49 - TSS region transcription start site region 140394
Tssr140395 16 20621354 to 20621421 67 - TSS region transcription start site region 140395
Tssr140396 16 20621430 to 20621447 17 - TSS region transcription start site region 140396
Tssr140397 16 20621448 to 20621481 33 - TSS region transcription start site region 140397
Tssr140398 16 20622324 to 20622335 11 - TSS region transcription start site region 140398