Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18974980-20085918

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8064 16 18976574 to 18976770 196 CpG island CpG island 8064
Gm18747 16 19018058 to 19018702 644 - pseudogene predicted gene, 18747
Igl 16 19026858 to 19260844 233986 - complex/cluster/region immunoglobulin lambda chain complex
Gm10088 16 19028232 to 19028654 422 + pseudogene predicted gene 10088
Tssr137393 16 19035889 to 19035918 29 + TSS region transcription start site region 137393
Tssr137394 16 19051332 to 19051369 37 + TSS region transcription start site region 137394
Iglc1 16 19061752 to 19062071 319 - gene segment immunoglobulin lambda constant 1
Iglj1 16 19063225 to 19063262 37 - gene segment immunoglobulin lambda joining 1
Tssr140297 16 19063238 to 19063249 11 - TSS region transcription start site region 140297
Tssr140298 16 19063266 to 19063285 19 - TSS region transcription start site region 140298
Tssr137395 16 19063294 to 19063331 37 + TSS region transcription start site region 137395
Tssr140299 16 19063465 to 19063504 39 - TSS region transcription start site region 140299
Tssr140300 16 19063521 to 19063560 39 - TSS region transcription start site region 140300
Tssr137396 16 19063587 to 19063614 27 + TSS region transcription start site region 137396
Tssr140301 16 19063590 to 19063599 9 - TSS region transcription start site region 140301
Iglc3 16 19065365 to 19065681 316 - gene segment immunoglobulin lambda constant 3
Iglj3p 16 19066371 to 19066408 37 - pseudogenic gene segment immunoglobulin lambda joining 3 pseudogene
Iglj3 16 19067041 to 19067078 37 - gene segment immunoglobulin lambda joining 3
Tssr140302 16 19067059 to 19067094 35 - TSS region transcription start site region 140302
Tssr140303 16 19067104 to 19067109 5 - TSS region transcription start site region 140303
Tssr140304 16 19067115 to 19067165 50 - TSS region transcription start site region 140304
Tssr140305 16 19067183 to 19067195 12 - TSS region transcription start site region 140305
Tssr137397 16 19067232 to 19067245 13 + TSS region transcription start site region 137397
Iglv1 16 19085017 to 19085460 443 - gene segment immunoglobulin lambda variable 1
Tssr140306 16 19085490 to 19085506 16 - TSS region transcription start site region 140306
2010309G21Rik 16 19090060 to 19106870 16810 + antisense lncRNA gene RIKEN cDNA 2010309G21 gene
Gm18748 16 19161427 to 19168046 6619 - pseudogene predicted gene, 18748
Tssr137398 16 19179506 to 19179547 41 + TSS region transcription start site region 137398
Iglc4 16 19194999 to 19195312 313 - pseudogenic gene segment immunoglobulin lambda constant 4
Iglj4 16 19196495 to 19196536 41 - pseudogenic gene segment immunoglobulin lambda joining 4
Iglc2 16 19198536 to 19198852 316 - gene segment immunoglobulin lambda constant 2
Iglj2 16 19200198 to 19200235 37 - gene segment immunoglobulin lambda joining 2
Tssr140307 16 19200230 to 19200250 20 - TSS region transcription start site region 140307
Tssr140308 16 19200275 to 19200297 22 - TSS region transcription start site region 140308
Tssr140309 16 19200308 to 19200318 10 - TSS region transcription start site region 140309
Tssr140310 16 19200350 to 19200354 4 - TSS region transcription start site region 140310
Gm43388 16 19212660 to 19236776 24116 - lincRNA gene predicted gene 43388
Gm35545 16 19217787 to 19241334 23547 + lncRNA gene predicted gene, 35545
Tssr140311 16 19218418 to 19218427 9 - TSS region transcription start site region 140311
Tssr140312 16 19218449 to 19218456 7 - TSS region transcription start site region 140312
Tssr137399 16 19218572 to 19218603 31 + TSS region transcription start site region 137399
Tssr137400 16 19218613 to 19218620 7 + TSS region transcription start site region 137400
Gm42870 16 19231333 to 19234802 3469 + unclassified gene predicted gene 42870
Tssr137401 16 19232603 to 19232608 5 + TSS region transcription start site region 137401
Tssr140313 16 19235621 to 19235630 9 - TSS region transcription start site region 140313
Tssr140314 16 19236091 to 19236109 18 - TSS region transcription start site region 140314
Tssr140315 16 19236210 to 19236213 3 - TSS region transcription start site region 140315
Tssr140316 16 19236218 to 19236251 33 - TSS region transcription start site region 140316
Tssr140317 16 19236255 to 19236264 9 - TSS region transcription start site region 140317
Tssr137402 16 19236342 to 19236352 10 + TSS region transcription start site region 137402
Tssr137403 16 19236391 to 19236403 12 + TSS region transcription start site region 137403
Tssr140318 16 19236818 to 19236829 11 - TSS region transcription start site region 140318
Tssr140319 16 19236846 to 19236856 10 - TSS region transcription start site region 140319
Tssr140320 16 19236860 to 19236866 6 - TSS region transcription start site region 140320
Tssr140321 16 19236868 to 19236892 24 - TSS region transcription start site region 140321
Tssr140322 16 19236898 to 19236907 9 - TSS region transcription start site region 140322
Tssr140323 16 19241104 to 19241108 4 - TSS region transcription start site region 140323
Iglv3 16 19241208 to 19241679 471 - gene segment immunoglobulin lambda variable 3
Tssr137404 16 19241214 to 19241259 45 + TSS region transcription start site region 137404
Tssr137405 16 19241274 to 19241284 10 + TSS region transcription start site region 137405
Tssr140324 16 19241695 to 19241710 15 - TSS region transcription start site region 140324
Tssr140325 16 19241712 to 19241736 24 - TSS region transcription start site region 140325
Tssr140326 16 19241807 to 19241814 7 - TSS region transcription start site region 140326
A530030E21Rik 16 19243525 to 19244834 1309 + unclassified gene RIKEN cDNA A530030E21 gene
Iglv2 16 19260403 to 19260844 441 - gene segment immunoglobulin lambda variable 2
Tssr140327 16 19260875 to 19260889 14 - TSS region transcription start site region 140327
Olfr164 16 19285794 to 19286741 947 - protein coding gene olfactory receptor 164
Gm22158 16 19307699 to 19307824 125 + snoRNA gene predicted gene, 22158
Gm23612 16 19319686 to 19319795 109 + miRNA gene predicted gene, 23612
Olfr165 16 19406244 to 19423134 16890 - protein coding gene olfactory receptor 165
Gm25762 16 19411158 to 19411289 131 + snoRNA gene predicted gene, 25762
Olfr166 16 19486840 to 19487778 938 + protein coding gene olfactory receptor 166
Olfr167 16 19514696 to 19515634 938 - protein coding gene olfactory receptor 167
Olfr168 16 19529980 to 19530918 938 - protein coding gene olfactory receptor 168
Olfr169 16 19565940 to 19566881 941 - protein coding gene olfactory receptor 169
Olfr170 16 19605725 to 19606666 941 - protein coding gene olfactory receptor 170
Olfr171 16 19624157 to 19625101 944 - protein coding gene olfactory receptor 171
Gm49596 16 19631902 to 19632342 440 + pseudogene predicted gene, 49596
Lamp3 16 19653381 to 19706365 52984 - protein coding gene lysosomal-associated membrane protein 3
Tssr140328 16 19673167 to 19673184 17 - TSS region transcription start site region 140328
Tssr140329 16 19673248 to 19673257 9 - TSS region transcription start site region 140329
Tssr140330 16 19701324 to 19701335 11 - TSS region transcription start site region 140330
Tssr140331 16 19706293 to 19706297 4 - TSS region transcription start site region 140331
Tssr140332 16 19706305 to 19706333 28 - TSS region transcription start site region 140332
Tssr140333 16 19706340 to 19706352 12 - TSS region transcription start site region 140333
Tssr140334 16 19706370 to 19706399 29 - TSS region transcription start site region 140334
Tssr140335 16 19708476 to 19708497 21 - TSS region transcription start site region 140335
Gm17799 16 19723312 to 19723978 666 + pseudogene predicted gene, 17799
Tssr140336 16 19758206 to 19758213 7 - TSS region transcription start site region 140336
Tssr137406 16 19760195 to 19760227 32 + TSS region transcription start site region 137406
Tssr137407 16 19760232 to 19760247 15 + TSS region transcription start site region 137407
B3gnt5 16 19760234 to 19772760 12526 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
Tssr137408 16 19760263 to 19760331 68 + TSS region transcription start site region 137408
Tssr137409 16 19760336 to 19760394 58 + TSS region transcription start site region 137409
Tssr137410 16 19760397 to 19760424 27 + TSS region transcription start site region 137410
Cpgi8065 16 19760593 to 19761486 893 CpG island CpG island 8065
Tssr137411 16 19760627 to 19760644 17 + TSS region transcription start site region 137411
Tssr137412 16 19760795 to 19760798 3 + TSS region transcription start site region 137412
Tssr137413 16 19760825 to 19760836 11 + TSS region transcription start site region 137413
Tssr137414 16 19760902 to 19760909 7 + TSS region transcription start site region 137414
Tssr137415 16 19761963 to 19761969 6 + TSS region transcription start site region 137415
Tssr137416 16 19765061 to 19765066 5 + TSS region transcription start site region 137416
Gm49597 16 19852455 to 19852767 312 - pseudogene predicted gene, 49597
Tssr140337 16 19873099 to 19873102 3 - TSS region transcription start site region 140337
A930003A15Rik 16 19876567 to 19884274 7707 - lincRNA gene RIKEN cDNA A930003A15 gene
Gm49598 16 19883504 to 19884284 780 + lincRNA gene predicted gene, 49598
Tssr140338 16 19883782 to 19883806 24 - TSS region transcription start site region 140338
Gm27883 16 19883799 to 19883900 101 - miRNA gene predicted gene, 27883
Tssr4807 16 19883824 to 19883831 7 - TSS region transcription start site region 4807
Tssr140339 16 19883861 to 19883872 11 - TSS region transcription start site region 140339
Tssr140340 16 19883873 to 19883915 42 - TSS region transcription start site region 140340
Tssr140341 16 19884231 to 19884252 21 - TSS region transcription start site region 140341
Tssr140342 16 19884267 to 19884285 18 - TSS region transcription start site region 140342
Tssr140343 16 19918288 to 19918293 5 - TSS region transcription start site region 140343
Klhl6 16 19946496 to 19983037 36541 - protein coding gene kelch-like 6
Tssr4808 16 19968176 to 19968181 5 - TSS region transcription start site region 4808
Tssr140344 16 19982959 to 19982964 5 - TSS region transcription start site region 140344
Tssr140345 16 19983005 to 19983029 24 - TSS region transcription start site region 140345
Tssr140346 16 19983031 to 19983037 6 - TSS region transcription start site region 140346
Tssr140347 16 19983052 to 19983067 15 - TSS region transcription start site region 140347
Tssr4809 16 19983112 to 19983117 5 - TSS region transcription start site region 4809
D16Mit144 16 20032633 to 20032782 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 144